Description

Ensembl ID MGP_FVBNJ_G0027922 Gene ID Accession -
Symbol Ddx58 Alias - Full Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
Status Confidence Length 36363 bases Strand Minus strand
Position 4 : 35906886 - 35943248 RNA binding domain ResIII , DEAD , RIG-I_C , RIG-I_C-RD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0064712 ResIII PF04851 3.2e-17 1
MGP_FVBNJ_P0064712 DEAD PF00270 1.3e-16 2
MGP_FVBNJ_P0064712 RIG-I_C PF18119 2.6e-38 3
MGP_FVBNJ_P0064709 ResIII PF04851 5.4e-17 1
MGP_FVBNJ_P0064709 DEAD PF00270 2.8e-16 2
MGP_FVBNJ_P0064709 RIG-I_C PF18119 3.3e-38 3
MGP_FVBNJ_P0064709 RIG-I_C-RD PF11648 2.9e-35 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- MGP_FVBNJ_T0064707 386 No protein -
- MGP_FVBNJ_T0064708 3533 No protein -
- MGP_FVBNJ_T0064709 3874 926aa MGP_FVBNJ_P0064709"/note="transcript_id=MGP_FVBNJ_T0064709
- MGP_FVBNJ_T0064710 433 No protein -
- MGP_FVBNJ_T0064711 756 No protein -
- MGP_FVBNJ_T0064712 2127 707aa MGP_FVBNJ_P0064712"/note="transcript_id=MGP_FVBNJ_T0064712
- MGP_FVBNJ_T0064713 1641 No protein -
- MGP_FVBNJ_T0064714 1250 No protein -
- MGP_FVBNJ_T0064715 541 No protein -
- MGP_FVBNJ_T0064716 1607 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P005470245.853729.7561mus_musculus_fvbnjMGP_FVBNJ_P006470950.755932.9374
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P003217552.064932.4484mus_musculus_fvbnjMGP_FVBNJ_P006470938.120923.7581

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470998.920197.9482mus_caroliMGP_CAROLIEiJ_P006177698.920197.9482
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0065048100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_ajMGP_AJ_P0065079100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_balbcjMGP_BALBcJ_P0064999100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0065488100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_dba2jMGP_DBA2J_P0064760100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_cbajMGP_CBAJ_P0064637100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_c3hhejMGP_C3HHeJ_P0064688100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_lpjMGP_LPJ_P0064892100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470999.136198.3801mus_spretusMGP_SPRETEiJ_P006420999.136198.3801
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0065704100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculusENSMUSP00000042433100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470999.89299.784mus_musculus_pwkphjMGP_PWKPhJ_P006455899.89299.784
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470991.360789.2009mus_pahariMGP_PahariEiJ_P005743897.353395.0518
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470998.812197.8402mus_spicilegusENSMSIP0000002954299.240898.2646
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470999.78499.46mus_musculus_casteijMGP_CASTEiJ_P006504099.78499.46
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0064713100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470999.89299.784mus_musculus_wsbeijMGP_WSBEiJ_P006393999.89299.784
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P0064709100100mus_musculus_akrjMGP_AKRJ_P0065018100100
MGP_FVBNJ_G0027922mus_musculus_fvbnjMGP_FVBNJ_P006470995.464490.8207rattus_norvegicusENSRNOP0000005749295.464490.8207

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression