RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_FVBNJ_G0027822	Gene ID		Accession	-
Symbol	Chd7	Alias	-	Full Name	chromodomain helicase DNA binding protein 7
Status	Confidence	Length	180484 bases	Strand	Plus strand
Position	4 : 5003251 - 5183734	RNA binding domain	ResIII , BRK
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0064304	ResIII	PF04851	4.4e-06	1
MGP_FVBNJ_P0064304	BRK	PF07533	3.9e-36	2
MGP_FVBNJ_P0064304	BRK	PF07533	3.9e-36	3
MGP_FVBNJ_P0064300	ResIII	PF04851	4.5e-06	1
MGP_FVBNJ_P0064300	BRK	PF07533	3.9e-36	2
MGP_FVBNJ_P0064300	BRK	PF07533	3.9e-36	3
MGP_FVBNJ_P0064301	ResIII	PF04851	4.5e-06	1
MGP_FVBNJ_P0064301	BRK	PF07533	3.9e-36	2
MGP_FVBNJ_P0064301	BRK	PF07533	3.9e-36	3
MGP_FVBNJ_P0064303	BRK	PF07533	3.3e-19	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Chd7-005	MGP_FVBNJ_T0064298	4905	No protein	-
-	MGP_FVBNJ_T0064299	2360	631aa	MGP_FVBNJ_P0064299"/note="transcript_id=MGP_FVBNJ_T0064299
-	MGP_FVBNJ_T0064300	9445	2986aa	MGP_FVBNJ_P0064300"/note="transcript_id=MGP_FVBNJ_T0064300
-	MGP_FVBNJ_T0064301	10216	2986aa	MGP_FVBNJ_P0064301"/note="transcript_id=MGP_FVBNJ_T0064301
-	MGP_FVBNJ_T0064302	458	19aa	MGP_FVBNJ_P0064302"/note="transcript_id=MGP_FVBNJ_T0064302
-	MGP_FVBNJ_T0064303	3463	941aa	MGP_FVBNJ_P0064303"/note="transcript_id=MGP_FVBNJ_T0064303
-	MGP_FVBNJ_T0064304	8958	2985aa	MGP_FVBNJ_P0064304"/note="transcript_id=MGP_FVBNJ_T0064304
-	MGP_FVBNJ_T0064305	741	No protein	-

Gene Model

Click here to download MGP_FVBNJ_G0027822's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0027822's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0051093	42.2957	24.5165	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.706	13.1614
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0083998	41.8719	24.959	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	25.6196	15.2713
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0079796	37.9938	23.3888	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	24.4809	15.0703
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0062353	53.2222	35.2222	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	16.0415	10.6162
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0066778	39.759	24.2303	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	9.94642	6.06162
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0096611	34.3548	19.8387	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	14.2666	8.23845
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0051368	51.1571	32.2777	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	14.0656	8.87475
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0093754	32.2647	17.3261	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	15.8406	8.50636
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064386	37.9233	21.5576	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	11.2525	6.39652
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0089487	63.9247	51.3071	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	61.42	49.2967
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0037136	34.4418	20.7838	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	9.71199	5.86068
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0024371	17.6225	9.43847	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	9.87944	5.29136
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0069198	38.6783	24.0266	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	25.2847	15.7066
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0038622	34.3687	19.1762	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	17.0462	9.51105
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0077501	36.8266	22.7228	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	12.5921	7.76959
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0056605	30.149	16.3891	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	11.5204	6.26256
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0020269	35.0549	19.5604	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	10.6832	5.96115
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0091008	41.0161	24.4734	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.1701	13.2284
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0058713	61.7115	47.547	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	56.0281	43.1681
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0029739	37.0316	23.747	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	25.4856	16.3429
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0089111	52.1408	34.2531	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	18.3523	12.0563
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0095542	50.9416	32.3917	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	18.1179	11.5204
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0059887	28.7139	15.9521	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	9.64501	5.35834
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0051310	23.7554	12.7706	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	14.7019	7.90355
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0072947	21.6804	11.1038	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.0362	11.286
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0086390	20.911	12.565	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.9069	13.7642
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0086394	21.8094	13.0856	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	22.6055	13.5633
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0021695	35.2666	18.4284	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	12.6256	6.59746
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0062441	29.877	15.1142	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	11.3865	5.76021

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	99.4307	99.2632	mus_caroli	MGP_CAROLIEiJ_P0061371	99.4307	99.2632
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0064635	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_aj	MGP_AJ_P0064663	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0064583	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0065078	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_dba2j	MGP_DBA2J_P0064344	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_cbaj	MGP_CBAJ_P0064230	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0064273	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_lpj	MGP_LPJ_P0064487	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	99.7321	99.5646	mus_spretus	MGP_SPRETEiJ_P0063797	99.7321	99.5646
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0065293	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus	ENSMUSP00000059079	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	99.866	99.866	mus_musculus_pwkphj	MGP_PWKPhJ_P0064123	99.866	99.866
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	98.8948	98.292	mus_pahari	MGP_PahariEiJ_P0057041	98.8948	98.292
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	99.6316	99.4642	mus_spicilegus	ENSMSIP00000036968	99.665	99.4975
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	99.8995	99.8995	mus_musculus_casteij	MGP_CASTEiJ_P0064593	99.8995	99.8995
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0064302	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0063529	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	100	100	mus_musculus_akrj	MGP_AKRJ_P0064605	100	100
MGP_FVBNJ_G0027822	mus_musculus_fvbnj	MGP_FVBNJ_P0064301	98.359	97.2204	rattus_norvegicus	ENSRNOP00000008901	98.392	97.2529

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression