Description

Ensembl ID MGP_FVBNJ_G0027781 Gene ID Accession -
Symbol Msh4 Alias - Full Name mutS homolog 4
Status Confidence Length 56502 bases Strand Minus strand
Position 3 : 148527911 - 148584412 RNA binding domain MutS_II
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0064080 MutS_II PF05188 2.6e-19 1
MGP_FVBNJ_P0064074 MutS_II PF05188 3.2e-19 1
MGP_FVBNJ_P0064081 MutS_II PF05188 1.4e-15 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Msh4-001 MGP_FVBNJ_T0064074 3325 958aa MGP_FVBNJ_P0064074"/note="transcript_id=MGP_FVBNJ_T0064074
- MGP_FVBNJ_T0064075 2156 No protein -
- MGP_FVBNJ_T0064076 2363 No protein -
- MGP_FVBNJ_T0064077 1000 No protein -
- MGP_FVBNJ_T0064078 2339 No protein -
- MGP_FVBNJ_T0064079 2129 No protein -
- MGP_FVBNJ_T0064080 2802 870aa MGP_FVBNJ_P0064080"/note="transcript_id=MGP_FVBNJ_T0064080
- MGP_FVBNJ_T0064081 3110 764aa MGP_FVBNJ_P0064081"/note="transcript_id=MGP_FVBNJ_T0064081

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P004846126.730515.3166mus_musculus_fvbnjMGP_FVBNJ_P006407437.891421.7119
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P004845339.679121.7112mus_musculus_fvbnjMGP_FVBNJ_P006407438.726521.19
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P004697638.655522.0888mus_musculus_fvbnjMGP_FVBNJ_P006407433.611719.2067

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407489.248488.6221mus_caroliMGP_CAROLIEiJ_P006112898.275997.5862
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.5825mus_musculus_129s1svimjMGP_129S1SvImJ_P006440410099.5825
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_ajMGP_AJ_P006443110099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_balbcjMGP_BALBcJ_P006435310099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_c57bl6njMGP_C57BL6NJ_P006484810099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_dba2jMGP_DBA2J_P006411710099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P0064074100100mus_musculus_cbajMGP_CBAJ_P0064002100100
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_c3hhejMGP_C3HHeJ_P006404210099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.5825mus_musculus_lpjMGP_LPJ_P006425810099.5825
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407497.807997.3904mus_spretusMGP_SPRETEiJ_P006356899.153498.7302
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_nzohlltjMGP_NZOHlLtJ_P006506510099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculusENSMUSP0000000563010099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407499.478198.9562mus_musculus_pwkphjMGP_PWKPhJ_P006389299.790699.267
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407493.319492.1712mus_pahariMGP_PahariEiJ_P007205398.458297.2467
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407499.373799.2693mus_spicilegusENSMSIP0000000812599.477599.373
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407499.269398.7474mus_musculus_casteijMGP_CASTEiJ_P006435999.581299.0576
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407410099.8956mus_musculus_nodshiltjMGP_NODShiLtJ_P006407510099.8956
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407499.895699.7912mus_musculus_wsbeijMGP_WSBEiJ_P006329999.895699.7912
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P0064074100100mus_musculus_akrjMGP_AKRJ_P0064375100100
MGP_FVBNJ_G0027781mus_musculus_fvbnjMGP_FVBNJ_P006407496.137893.8413rattus_norvegicusENSRNOP0000001410696.137893.8413

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression