RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0027781 | Gene ID |
|
Accession |
- |
Symbol |
Msh4 |
Alias |
- |
Full Name |
mutS homolog 4 |
Status |
Confidence |
Length |
56502 bases |
Strand |
Minus strand |
Position |
3 : 148527911 - 148584412 |
RNA binding domain |
MutS_II |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0064080 |
MutS_II |
PF05188 |
2.6e-19 |
1 |
MGP_FVBNJ_P0064074 |
MutS_II |
PF05188 |
3.2e-19 |
1 |
MGP_FVBNJ_P0064081 |
MutS_II |
PF05188 |
1.4e-15 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Msh4-001 |
MGP_FVBNJ_T0064074 |
3325 |
958aa |
MGP_FVBNJ_P0064074"/note="transcript_id=MGP_FVBNJ_T0064074 |
- |
MGP_FVBNJ_T0064075 |
2156 |
No protein |
- |
- |
MGP_FVBNJ_T0064076 |
2363 |
No protein |
- |
- |
MGP_FVBNJ_T0064077 |
1000 |
No protein |
- |
- |
MGP_FVBNJ_T0064078 |
2339 |
No protein |
- |
- |
MGP_FVBNJ_T0064079 |
2129 |
No protein |
- |
- |
MGP_FVBNJ_T0064080 |
2802 |
870aa |
MGP_FVBNJ_P0064080"/note="transcript_id=MGP_FVBNJ_T0064080 |
- |
MGP_FVBNJ_T0064081 |
3110 |
764aa |
MGP_FVBNJ_P0064081"/note="transcript_id=MGP_FVBNJ_T0064081 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0048461 | 26.7305 | 15.3166 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 37.8914 | 21.7119 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 39.6791 | 21.7112 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 38.7265 | 21.19 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0046976 | 38.6555 | 22.0888 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 33.6117 | 19.2067 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 89.2484 | 88.6221 | mus_caroli | MGP_CAROLIEiJ_P0061128 | 98.2759 | 97.5862 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.5825 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0064404 | 100 | 99.5825 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_aj | MGP_AJ_P0064431 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_balbcj | MGP_BALBcJ_P0064353 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0064848 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_dba2j | MGP_DBA2J_P0064117 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0064002 | 100 | 100 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_c3hhej | MGP_C3HHeJ_P0064042 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.5825 | mus_musculus_lpj | MGP_LPJ_P0064258 | 100 | 99.5825 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 97.8079 | 97.3904 | mus_spretus | MGP_SPRETEiJ_P0063568 | 99.1534 | 98.7302 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0065065 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus | ENSMUSP00000005630 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 99.4781 | 98.9562 | mus_musculus_pwkphj | MGP_PWKPhJ_P0063892 | 99.7906 | 99.267 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 93.3194 | 92.1712 | mus_pahari | MGP_PahariEiJ_P0072053 | 98.4582 | 97.2467 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 99.3737 | 99.2693 | mus_spicilegus | ENSMSIP00000008125 | 99.4775 | 99.373 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 99.2693 | 98.7474 | mus_musculus_casteij | MGP_CASTEiJ_P0064359 | 99.5812 | 99.0576 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 99.8956 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0064075 | 100 | 99.8956 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 99.8956 | 99.7912 | mus_musculus_wsbeij | MGP_WSBEiJ_P0063299 | 99.8956 | 99.7912 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0064375 | 100 | 100 |
MGP_FVBNJ_G0027781 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 96.1378 | 93.8413 | rattus_norvegicus | ENSRNOP00000014106 | 96.1378 | 93.8413 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |