RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0026587 | Gene ID |
|
Accession |
- |
Symbol |
Rprd1b |
Alias |
- |
Full Name |
regulation of nuclear pre-mRNA domain containing 1B |
Status |
Confidence |
Length |
107576 bases |
Strand |
Plus strand |
Position |
2 : 154119641 - 154227216 |
RNA binding domain |
CREPT , CID |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0058611 |
CREPT |
PF16566 |
6e-65 |
1 |
MGP_FVBNJ_P0058611 |
CID |
PF04818 |
1.5e-36 |
2 |
MGP_FVBNJ_P0058615 |
CREPT |
PF16566 |
6.1e-65 |
1 |
MGP_FVBNJ_P0058615 |
CID |
PF04818 |
1.5e-36 |
2 |
MGP_FVBNJ_P0058617 |
CREPT |
PF16566 |
3.6e-38 |
1 |
MGP_FVBNJ_P0058618 |
CREPT |
PF16566 |
1.5e-37 |
1 |
MGP_FVBNJ_P0058614 |
CREPT |
PF16566 |
1.9e-37 |
1 |
MGP_FVBNJ_P0058614 |
CID |
PF04818 |
9.4e-37 |
2 |
MGP_FVBNJ_P0058616 |
CREPT |
PF16566 |
9.1e-14 |
1 |
MGP_FVBNJ_P0058616 |
CID |
PF04818 |
5.2e-37 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Rprd1b-001 |
MGP_FVBNJ_T0058611 |
4498 |
325aa |
MGP_FVBNJ_P0058611"/note="transcript_id=MGP_FVBNJ_T0058611 |
- |
MGP_FVBNJ_T0058612 |
1597 |
No protein |
- |
- |
MGP_FVBNJ_T0058613 |
4173 |
No protein |
- |
- |
MGP_FVBNJ_T0058614 |
4393 |
294aa |
MGP_FVBNJ_P0058614"/note="transcript_id=MGP_FVBNJ_T0058614 |
- |
MGP_FVBNJ_T0058615 |
4277 |
326aa |
MGP_FVBNJ_P0058615"/note="transcript_id=MGP_FVBNJ_T0058615 |
- |
MGP_FVBNJ_T0058616 |
1910 |
224aa |
MGP_FVBNJ_P0058616"/note="transcript_id=MGP_FVBNJ_T0058616 |
- |
MGP_FVBNJ_T0058617 |
764 |
193aa |
MGP_FVBNJ_P0058617"/note="transcript_id=MGP_FVBNJ_T0058617 |
- |
MGP_FVBNJ_T0058618 |
428 |
142aa |
MGP_FVBNJ_P0058618"/note="transcript_id=MGP_FVBNJ_T0058618 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0048815 | 84.6154 | 68.5897 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 80.9816 | 65.6442 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0062174 | 10.6195 | 6.05854 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 47.8528 | 27.3006 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0055814 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 68.0982 | 68.0982 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0058902 | 99.1071 | 99.1071 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0058923 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0058859 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0059334 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0058630 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0058525 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0058561 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0058743 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0057972 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0059514 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus | ENSMUSP00000029180 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0058393 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_pahari | MGP_PahariEiJ_P0066795 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 89.5705 | 88.0368 | mus_spicilegus | ENSMSIP00000033175 | 88.7538 | 87.234 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0058824 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0058590 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0057840 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0058868 | 100 | 100 |
MGP_FVBNJ_G0026587 | mus_musculus_fvbnj | MGP_FVBNJ_P0058615 | 100 | 100 | rattus_norvegicus | ENSRNOP00000017265 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |