Description

Ensembl ID MGP_FVBNJ_G0026587 Gene ID Accession -
Symbol Rprd1b Alias - Full Name regulation of nuclear pre-mRNA domain containing 1B
Status Confidence Length 107576 bases Strand Plus strand
Position 2 : 154119641 - 154227216 RNA binding domain CREPT , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0058611 CREPT PF16566 6e-65 1
MGP_FVBNJ_P0058611 CID PF04818 1.5e-36 2
MGP_FVBNJ_P0058615 CREPT PF16566 6.1e-65 1
MGP_FVBNJ_P0058615 CID PF04818 1.5e-36 2
MGP_FVBNJ_P0058617 CREPT PF16566 3.6e-38 1
MGP_FVBNJ_P0058618 CREPT PF16566 1.5e-37 1
MGP_FVBNJ_P0058614 CREPT PF16566 1.9e-37 1
MGP_FVBNJ_P0058614 CID PF04818 9.4e-37 2
MGP_FVBNJ_P0058616 CREPT PF16566 9.1e-14 1
MGP_FVBNJ_P0058616 CID PF04818 5.2e-37 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rprd1b-001 MGP_FVBNJ_T0058611 4498 325aa MGP_FVBNJ_P0058611"/note="transcript_id=MGP_FVBNJ_T0058611
- MGP_FVBNJ_T0058612 1597 No protein -
- MGP_FVBNJ_T0058613 4173 No protein -
- MGP_FVBNJ_T0058614 4393 294aa MGP_FVBNJ_P0058614"/note="transcript_id=MGP_FVBNJ_T0058614
- MGP_FVBNJ_T0058615 4277 326aa MGP_FVBNJ_P0058615"/note="transcript_id=MGP_FVBNJ_T0058615
- MGP_FVBNJ_T0058616 1910 224aa MGP_FVBNJ_P0058616"/note="transcript_id=MGP_FVBNJ_T0058616
- MGP_FVBNJ_T0058617 764 193aa MGP_FVBNJ_P0058617"/note="transcript_id=MGP_FVBNJ_T0058617
- MGP_FVBNJ_T0058618 428 142aa MGP_FVBNJ_P0058618"/note="transcript_id=MGP_FVBNJ_T0058618

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P004881584.615468.5897mus_musculus_fvbnjMGP_FVBNJ_P005861580.981665.6442
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P006217410.61956.05854mus_musculus_fvbnjMGP_FVBNJ_P005861547.852827.3006

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_caroliMGP_CAROLIEiJ_P0055814100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P005861568.098268.0982mus_musculus_129s1svimjMGP_129S1SvImJ_P005890299.107199.1071
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_ajMGP_AJ_P0058923100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_balbcjMGP_BALBcJ_P0058859100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0059334100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_dba2jMGP_DBA2J_P0058630100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_cbajMGP_CBAJ_P0058525100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_c3hhejMGP_C3HHeJ_P0058561100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_lpjMGP_LPJ_P0058743100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_spretusMGP_SPRETEiJ_P0057972100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0059514100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculusENSMUSP00000029180100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_pwkphjMGP_PWKPhJ_P0058393100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_pahariMGP_PahariEiJ_P0066795100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P005861589.570588.0368mus_spicilegusENSMSIP0000003317588.753887.234
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_casteijMGP_CASTEiJ_P0058824100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0058590100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_wsbeijMGP_WSBEiJ_P0057840100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100mus_musculus_akrjMGP_AKRJ_P0058868100100
MGP_FVBNJ_G0026587mus_musculus_fvbnjMGP_FVBNJ_P0058615100100rattus_norvegicusENSRNOP00000017265100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression