Description

Ensembl ID MGP_FVBNJ_G0026280 Gene ID Accession -
Symbol Polr1b Alias - Full Name polymerase (RNA) I polypeptide B
Status Confidence Length 25968 bases Strand Plus strand
Position 2 : 125146895 - 125172862 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0057289 RNA_pol_Rpb2_1 PF04563 3.4e-34 1
MGP_FVBNJ_P0057289 RNA_pol_Rpa2_4 PF06883 4e-20 2
MGP_FVBNJ_P0057289 RNA_pol_Rpb2_3 PF04565 3.4e-29 3
MGP_FVBNJ_P0057289 RNA_pol_Rpb2_2 PF04561 7.9e-10 4
MGP_FVBNJ_P0057288 RNA_pol_Rpb2_1 PF04563 8e-34 1
MGP_FVBNJ_P0057288 RNA_pol_Rpa2_4 PF06883 6.6e-20 2
MGP_FVBNJ_P0057288 RNA_pol_Rpb2_3 PF04565 1.3e-28 3
MGP_FVBNJ_P0057288 RNA_pol_Rpb2_7 PF04560 1.1e-21 4
MGP_FVBNJ_P0057288 RNA_pol_Rpb2_2 PF04561 1.4e-09 5
MGP_FVBNJ_P0057288 RNA_pol_Rpb2_6 PF00562 1.4e-117 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr1b-001 MGP_FVBNJ_T0057288 3998 1135aa MGP_FVBNJ_P0057288"/note="transcript_id=MGP_FVBNJ_T0057288
- MGP_FVBNJ_T0057289 2769 754aa MGP_FVBNJ_P0057289"/note="transcript_id=MGP_FVBNJ_T0057289
- MGP_FVBNJ_T0057290 659 No protein -
- MGP_FVBNJ_T0057291 612 No protein -
- MGP_FVBNJ_T0057292 720 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P002643647.396331.1562mus_musculus_fvbnjMGP_FVBNJ_P005728847.312831.1013
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P007194944.633729.3867mus_musculus_fvbnjMGP_FVBNJ_P005728846.167430.3965

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728894.449393.5683mus_caroliMGP_CAROLIEiJ_P005452699.443498.5158
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728899.735799.5595mus_musculus_129s1svimjMGP_129S1SvImJ_P005758096.669596.4987
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728810099.9119mus_musculus_ajMGP_AJ_P005761210099.9119
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728895.594795.3304mus_musculus_balbcjMGP_BALBcJ_P005755199.541399.2661
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728895.594795.0661mus_musculus_c57bl6njMGP_C57BL6NJ_P005802499.086898.5388
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728810099.8238mus_musculus_dba2jMGP_DBA2J_P005731110099.8238
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_cbajMGP_CBAJ_P0057214100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_c3hhejMGP_C3HHeJ_P0057243100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_lpjMGP_LPJ_P0057446100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728899.823899.5595mus_spretusMGP_SPRETEiJ_P005663599.823899.5595
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0058189100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728810099.9119mus_musculusENSMUSP0000009949410099.9119
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728810099.9119mus_musculus_pwkphjMGP_PWKPhJ_P005707210099.9119
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728898.766596.5639mus_pahariMGP_PahariEiJ_P006550598.766596.5639
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728899.735799.4714mus_spicilegusENSMSIP0000002108999.735799.4714
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_casteijMGP_CASTEiJ_P0057485100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0057258100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728899.911999.7357mus_musculus_wsbeijMGP_WSBEiJ_P005654399.911999.7357
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P0057288100100mus_musculus_akrjMGP_AKRJ_P0057561100100
MGP_FVBNJ_G0026280mus_musculus_fvbnjMGP_FVBNJ_P005728898.678495.2423rattus_norvegicusENSRNOP0000002488298.678495.2423

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression