RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0025577 | Gene ID |
|
Accession |
- |
Symbol |
Ifih1 |
Alias |
- |
Full Name |
interferon induced with helicase C domain 1 |
Status |
Confidence |
Length |
48245 bases |
Strand |
Minus strand |
Position |
2 : 59008196 - 59056440 |
RNA binding domain |
ResIII , DEAD , RIG-I_C , RIG-I_C-RD |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0054703 |
ResIII |
PF04851 |
2.6e-19 |
1 |
MGP_FVBNJ_P0054703 |
DEAD |
PF00270 |
9.4e-17 |
2 |
MGP_FVBNJ_P0054703 |
RIG-I_C |
PF18119 |
2.8e-27 |
3 |
MGP_FVBNJ_P0054703 |
RIG-I_C-RD |
PF11648 |
6.3e-37 |
4 |
MGP_FVBNJ_P0054702 |
ResIII |
PF04851 |
2.9e-19 |
1 |
MGP_FVBNJ_P0054702 |
DEAD |
PF00270 |
1e-16 |
2 |
MGP_FVBNJ_P0054702 |
RIG-I_C |
PF18119 |
3e-27 |
3 |
MGP_FVBNJ_P0054702 |
RIG-I_C-RD |
PF11648 |
6.7e-37 |
4 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Ifih1-001 |
MGP_FVBNJ_T0054702 |
5501 |
1025aa |
MGP_FVBNJ_P0054702"/note="transcript_id=MGP_FVBNJ_T0054702 |
- |
MGP_FVBNJ_T0054703 |
3647 |
976aa |
MGP_FVBNJ_P0054703"/note="transcript_id=MGP_FVBNJ_T0054703 |
- |
MGP_FVBNJ_T0054704 |
2903 |
No protein |
- |
- |
MGP_FVBNJ_T0054705 |
439 |
No protein |
- |
- |
MGP_FVBNJ_T0054706 |
2580 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0032175 | 62.5369 | 43.3628 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 41.3659 | 28.6829 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0064709 | 50.7559 | 32.9374 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 45.8537 | 29.7561 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 98.7317 | 97.8537 | mus_caroli | MGP_CAROLIEiJ_P0051982 | 98.7317 | 97.8537 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.6098 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0054994 | 99.7073 | 99.6098 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.8049 | 99.7073 | mus_musculus_aj | MGP_AJ_P0055013 | 99.8049 | 99.7073 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_balbcj | MGP_BALBcJ_P0054952 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0055436 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0054741 | 100 | 100 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_cbaj | MGP_CBAJ_P0054637 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_c3hhej | MGP_C3HHeJ_P0054684 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_lpj | MGP_LPJ_P0054841 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.3171 | 99.0244 | mus_spretus | MGP_SPRETEiJ_P0054047 | 99.3171 | 99.0244 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0055583 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus | ENSMUSP00000028259 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.8049 | 99.7073 | mus_musculus_pwkphj | MGP_PWKPhJ_P0054479 | 99.8049 | 99.7073 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 97.1707 | 95.6098 | mus_pahari | MGP_PahariEiJ_P0062975 | 97.1707 | 95.6098 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.3171 | 99.1219 | mus_spicilegus | ENSMSIP00000024181 | 99.3171 | 99.1219 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.6098 | 99.4146 | mus_musculus_casteij | MGP_CASTEiJ_P0054874 | 99.6098 | 99.4146 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0054686 | 100 | 100 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.6098 | mus_musculus_wsbeij | MGP_WSBEiJ_P0053959 | 99.7073 | 99.6098 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 99.7073 | 99.5122 | mus_musculus_akrj | MGP_AKRJ_P0054972 | 99.7073 | 99.5122 |
MGP_FVBNJ_G0025577 | mus_musculus_fvbnj | MGP_FVBNJ_P0054702 | 96.2927 | 93.4634 | rattus_norvegicus | ENSRNOP00000009621 | 96.1052 | 93.2814 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |