Description

Ensembl ID MGP_FVBNJ_G0025577 Gene ID Accession -
Symbol Ifih1 Alias - Full Name interferon induced with helicase C domain 1
Status Confidence Length 48245 bases Strand Minus strand
Position 2 : 59008196 - 59056440 RNA binding domain ResIII , DEAD , RIG-I_C , RIG-I_C-RD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0054703 ResIII PF04851 2.6e-19 1
MGP_FVBNJ_P0054703 DEAD PF00270 9.4e-17 2
MGP_FVBNJ_P0054703 RIG-I_C PF18119 2.8e-27 3
MGP_FVBNJ_P0054703 RIG-I_C-RD PF11648 6.3e-37 4
MGP_FVBNJ_P0054702 ResIII PF04851 2.9e-19 1
MGP_FVBNJ_P0054702 DEAD PF00270 1e-16 2
MGP_FVBNJ_P0054702 RIG-I_C PF18119 3e-27 3
MGP_FVBNJ_P0054702 RIG-I_C-RD PF11648 6.7e-37 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ifih1-001 MGP_FVBNJ_T0054702 5501 1025aa MGP_FVBNJ_P0054702"/note="transcript_id=MGP_FVBNJ_T0054702
- MGP_FVBNJ_T0054703 3647 976aa MGP_FVBNJ_P0054703"/note="transcript_id=MGP_FVBNJ_T0054703
- MGP_FVBNJ_T0054704 2903 No protein -
- MGP_FVBNJ_T0054705 439 No protein -
- MGP_FVBNJ_T0054706 2580 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P003217562.536943.3628mus_musculus_fvbnjMGP_FVBNJ_P005470241.365928.6829
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P006470950.755932.9374mus_musculus_fvbnjMGP_FVBNJ_P005470245.853729.7561

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470298.731797.8537mus_caroliMGP_CAROLIEiJ_P005198298.731797.8537
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.6098mus_musculus_129s1svimjMGP_129S1SvImJ_P005499499.707399.6098
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.804999.7073mus_musculus_ajMGP_AJ_P005501399.804999.7073
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_balbcjMGP_BALBcJ_P005495299.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_c57bl6njMGP_C57BL6NJ_P005543699.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P0054702100100mus_musculus_dba2jMGP_DBA2J_P0054741100100
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_cbajMGP_CBAJ_P005463799.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_c3hhejMGP_C3HHeJ_P005468499.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_lpjMGP_LPJ_P005484199.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.317199.0244mus_spretusMGP_SPRETEiJ_P005404799.317199.0244
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_nzohlltjMGP_NZOHlLtJ_P005558399.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculusENSMUSP0000002825999.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.804999.7073mus_musculus_pwkphjMGP_PWKPhJ_P005447999.804999.7073
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470297.170795.6098mus_pahariMGP_PahariEiJ_P006297597.170795.6098
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.317199.1219mus_spicilegusENSMSIP0000002418199.317199.1219
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.609899.4146mus_musculus_casteijMGP_CASTEiJ_P005487499.609899.4146
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P0054702100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0054686100100
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.6098mus_musculus_wsbeijMGP_WSBEiJ_P005395999.707399.6098
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470299.707399.5122mus_musculus_akrjMGP_AKRJ_P005497299.707399.5122
MGP_FVBNJ_G0025577mus_musculus_fvbnjMGP_FVBNJ_P005470296.292793.4634rattus_norvegicusENSRNOP0000000962196.105293.2814

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression