| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | MGP_FVBNJ_G0024809 | Gene ID |
|
Accession |
- |
| Symbol |
Smarca2 |
Alias |
- |
Full Name |
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
| Status |
Confidence |
Length |
177614 bases |
Strand |
Plus strand |
| Position |
19 : 23455381 - 23632994 |
RNA binding domain |
ResIII , BRK |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| MGP_FVBNJ_P0051094 |
ResIII |
PF04851 |
3.6e-08 |
1 |
| MGP_FVBNJ_P0051094 |
BRK |
PF07533 |
1e-17 |
2 |
| MGP_FVBNJ_P0051095 |
ResIII |
PF04851 |
3.9e-08 |
1 |
| MGP_FVBNJ_P0051095 |
BRK |
PF07533 |
1.1e-17 |
2 |
| MGP_FVBNJ_P0051092 |
ResIII |
PF04851 |
3.9e-08 |
1 |
| MGP_FVBNJ_P0051092 |
BRK |
PF07533 |
1.1e-17 |
2 |
| MGP_FVBNJ_P0051093 |
ResIII |
PF04851 |
4e-08 |
1 |
| MGP_FVBNJ_P0051093 |
BRK |
PF07533 |
1.1e-17 |
2 |
| MGP_FVBNJ_P0051096 |
ResIII |
PF04851 |
2.1e-06 |
1 |
| MGP_FVBNJ_P0051096 |
BRK |
PF07533 |
1e-17 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| Smarca2-001 |
MGP_FVBNJ_T0051092 |
5862 |
1585aa |
MGP_FVBNJ_P0051092"/note="transcript_id=MGP_FVBNJ_T0051092 |
| - |
MGP_FVBNJ_T0051093 |
5866 |
1603aa |
MGP_FVBNJ_P0051093"/note="transcript_id=MGP_FVBNJ_T0051093 |
| - |
MGP_FVBNJ_T0051094 |
5917 |
1512aa |
MGP_FVBNJ_P0051094"/note="transcript_id=MGP_FVBNJ_T0051094 |
| - |
MGP_FVBNJ_T0051095 |
5949 |
1576aa |
MGP_FVBNJ_P0051095"/note="transcript_id=MGP_FVBNJ_T0051095 |
| - |
MGP_FVBNJ_T0051096 |
4584 |
1527aa |
MGP_FVBNJ_P0051096"/note="transcript_id=MGP_FVBNJ_T0051096 |
| - |
MGP_FVBNJ_T0051097 |
651 |
175aa |
MGP_FVBNJ_P0051097"/note="transcript_id=MGP_FVBNJ_T0051097 |
| - |
MGP_FVBNJ_T0051098 |
661 |
No protein |
- |
| - |
MGP_FVBNJ_T0051099 |
1584 |
No protein |
- |
| - |
MGP_FVBNJ_T0051100 |
867 |
No protein |
- |
| - |
MGP_FVBNJ_T0051101 |
426 |
No protein |
- |
| - |
MGP_FVBNJ_T0051102 |
929 |
254aa |
MGP_FVBNJ_P0051102"/note="transcript_id=MGP_FVBNJ_T0051102 |
| - |
MGP_FVBNJ_T0051103 |
942 |
254aa |
MGP_FVBNJ_P0051103"/note="transcript_id=MGP_FVBNJ_T0051103 |
| - |
MGP_FVBNJ_T0051104 |
788 |
224aa |
MGP_FVBNJ_P0051104"/note="transcript_id=MGP_FVBNJ_T0051104 |
| - |
MGP_FVBNJ_T0051105 |
879 |
276aa |
MGP_FVBNJ_P0051105"/note="transcript_id=MGP_FVBNJ_T0051105 |
| - |
MGP_FVBNJ_T0051106 |
1856 |
236aa |
MGP_FVBNJ_P0051106"/note="transcript_id=MGP_FVBNJ_T0051106 |
| - |
MGP_FVBNJ_T0051107 |
835 |
235aa |
MGP_FVBNJ_P0051107"/note="transcript_id=MGP_FVBNJ_T0051107 |
| - |
MGP_FVBNJ_T0051108 |
508 |
83aa |
MGP_FVBNJ_P0051108"/note="transcript_id=MGP_FVBNJ_T0051108 |
| - |
MGP_FVBNJ_T0051109 |
1458 |
113aa |
MGP_FVBNJ_P0051109"/note="transcript_id=MGP_FVBNJ_T0051109 |
| - |
MGP_FVBNJ_T0051110 |
966 |
119aa |
MGP_FVBNJ_P0051110"/note="transcript_id=MGP_FVBNJ_T0051110 |
| - |
MGP_FVBNJ_T0051111 |
736 |
119aa |
MGP_FVBNJ_P0051111"/note="transcript_id=MGP_FVBNJ_T0051111 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0083998 | 28.7904 | 18.1171 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 32.8135 | 20.6488 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0064301 | 22.706 | 13.1614 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 42.2957 | 24.5165 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0079796 | 28.7422 | 15.9563 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 34.4978 | 19.1516 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0062353 | 42.1111 | 28 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 23.6432 | 15.7205 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0066778 | 38.822 | 22.7577 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 18.0911 | 10.6051 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0096611 | 29.1129 | 16.0484 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 22.5203 | 12.4142 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051368 | 46.4068 | 29.3544 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 23.7679 | 15.0343 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0093754 | 24.2156 | 13.9154 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 22.146 | 12.7261 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0064386 | 35.3273 | 20.4289 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 19.5259 | 11.2913 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0089487 | 22.4468 | 13.1056 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 40.1747 | 23.456 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0037136 | 32.7791 | 20.19 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 17.2177 | 10.6051 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0024371 | 16.129 | 8.54241 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 16.8434 | 8.92077 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0069198 | 28.7398 | 16.752 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 34.9969 | 20.3993 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0038622 | 28.1567 | 15.395 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 26.0137 | 14.2233 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0077501 | 37.4143 | 23.0167 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 23.8303 | 14.66 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0056605 | 31.2007 | 17.4408 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 22.2084 | 12.4142 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0020269 | 31.2088 | 18.022 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 17.7168 | 10.2308 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0091008 | 84.6344 | 76.518 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 85.2152 | 77.043 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0058713 | 21.8738 | 12.6153 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 36.9931 | 21.335 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0029739 | 27.6886 | 16.1071 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 35.4959 | 20.6488 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0089111 | 43.2921 | 27.4025 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 28.3843 | 17.9663 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0095542 | 41.5254 | 26.177 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 27.5109 | 17.3425 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0059887 | 28.8136 | 17.8465 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 18.0287 | 11.1666 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051310 | 23.8095 | 13.6364 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 27.4485 | 15.7205 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0072947 | 16.9028 | 9.02801 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 32.0025 | 17.093 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0086390 | 16.4476 | 9.38551 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 33.5621 | 19.1516 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0086394 | 17.1567 | 9.75767 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 33.1254 | 18.8397 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0021695 | 26.1927 | 14.9673 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 17.4672 | 9.98129 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0062441 | 29.7012 | 15.0264 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 21.0855 | 10.6675 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.6881 | 99.6257 | mus_caroli | MGP_CAROLIEiJ_P0048436 | 99.7503 | 99.6879 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0051399 | 100 | 100 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_aj | MGP_AJ_P0051417 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0051362 | 100 | 100 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0051849 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_dba2j | MGP_DBA2J_P0051137 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_cbaj | MGP_CBAJ_P0051033 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_c3hhej | MGP_C3HHeJ_P0051089 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0051254 | 100 | 100 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.7505 | 99.6881 | mus_spretus | MGP_SPRETEiJ_P0050427 | 99.8127 | 99.7503 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0051971 | 100 | 100 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus | ENSMUSP00000135784 | 99.9375 | 99.9375 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.2514 | 99.2514 | mus_musculus_pwkphj | MGP_PWKPhJ_P0050826 | 99.8118 | 99.8118 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.2514 | 99.0643 | mus_pahari | MGP_PahariEiJ_P0021404 | 99.6243 | 99.4364 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.7505 | mus_spicilegus | ENSMSIP00000027133 | 99.7506 | 99.6883 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.8129 | 99.8129 | mus_musculus_casteij | MGP_CASTEiJ_P0051221 | 99.8752 | 99.8752 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0051086 | 100 | 100 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0050379 | 99.9377 | 99.9377 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0051364 | 99.8132 | 99.8132 |
| MGP_FVBNJ_G0024809 | mus_musculus_fvbnj | MGP_FVBNJ_P0051093 | 99.0643 | 98.3157 | rattus_norvegicus | ENSRNOP00000016740 | 99.4364 | 98.685 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
