RBPWorld - a comprehensive database of RNA Binding Proteins

Welcome to

RBP World!

Description

Ensembl ID	MGP_FVBNJ_G0024000	Gene ID		Accession	-
Symbol	Rprd1a	Alias	-	Full Name	regulation of nuclear pre-mRNA domain containing 1A
Status	Confidence	Length	50164 bases	Strand	Minus strand
Position	18 : 21045412 - 21095575	RNA binding domain	CREPT , CID
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0048815	CREPT	PF16566	2.7e-58	1
MGP_FVBNJ_P0048815	CID	PF04818	2.4e-38	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rprd1a-201	MGP_FVBNJ_T0048815	4297	312aa	MGP_FVBNJ_P0048815"/note="transcript_id=MGP_FVBNJ_T0048815

Gene Model

Click here to download MGP_FVBNJ_G0024000's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0024000's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0058615	80.9816	65.6442	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	84.6154	68.5897
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0062174	10.5514	6.33084	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	49.6795	29.8077

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0049135	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_aj	MGP_AJ_P0049113	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0049075	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0049567	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_dba2j	MGP_DBA2J_P0048851	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_cbaj	MGP_CBAJ_P0048742	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0048820	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_lpj	MGP_LPJ_P0048966	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_spretus	MGP_SPRETEiJ_P0048108	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0049671	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus	ENSMUSP00000043618	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0048510	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_spicilegus	ENSMSIP00000026150	75.1807	75.1807
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0048911	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0048817	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0048119	100	100
MGP_FVBNJ_G0024000	mus_musculus_fvbnj	MGP_FVBNJ_P0048815	100	100	mus_musculus_akrj	MGP_AKRJ_P0049075	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression