Description

Ensembl ID MGP_FVBNJ_G0023898 Gene ID Accession -
Symbol Msh2 Alias - Full Name mutS homolog 2
Status Confidence Length 50047 bases Strand Plus strand
Position 17 : 86096014 - 86146060 RNA binding domain MutS_II
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0048453 MutS_II PF05188 1.1e-21 1
MGP_FVBNJ_P0048456 MutS_II PF05188 3.8e-06 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Msh2-001 MGP_FVBNJ_T0048453 3283 935aa MGP_FVBNJ_P0048453"/note="transcript_id=MGP_FVBNJ_T0048453
- MGP_FVBNJ_T0048454 1752 No protein -
- MGP_FVBNJ_T0048455 2502 No protein -
- MGP_FVBNJ_T0048456 630 209aa MGP_FVBNJ_P0048456"/note="transcript_id=MGP_FVBNJ_T0048456
- MGP_FVBNJ_T0048457 409 No protein -
- MGP_FVBNJ_T0048458 510 67aa MGP_FVBNJ_P0048458"/note="transcript_id=MGP_FVBNJ_T0048458

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P006407438.726521.19mus_musculus_fvbnjMGP_FVBNJ_P004845339.679121.7112
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004846129.234217.673mus_musculus_fvbnjMGP_FVBNJ_P004845342.459925.6684
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004697637.935221.4886mus_musculus_fvbnjMGP_FVBNJ_P004845333.796819.1444

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845399.572298.6096mus_caroliMGP_CAROLIEiJ_P004581899.465898.5043
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0048773100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.8931mus_musculus_ajMGP_AJ_P004875110099.8931
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.8931mus_musculus_balbcjMGP_BALBcJ_P004871210099.8931
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0049204100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_dba2jMGP_DBA2J_P0048484100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.8931mus_musculus_cbajMGP_CBAJ_P004838310099.8931
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.8931mus_musculus_c3hhejMGP_C3HHeJ_P004845610099.8931
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_lpjMGP_LPJ_P0048601100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845399.893199.7861mus_spretusMGP_SPRETEiJ_P004774299.893199.7861
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0049304100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculusENSMUSP00000024967100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.8931mus_musculus_pwkphjMGP_PWKPhJ_P004813610099.8931
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845398.823597.6471mus_pahariMGP_PahariEiJ_P004533099.035497.8564
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845392.727392.2995mus_spicilegusENSMSIP0000001150110099.5386
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845310099.4652mus_musculus_casteijMGP_CASTEiJ_P004853810099.4652
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0048456100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_wsbeijMGP_WSBEiJ_P0047759100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P0048453100100mus_musculus_akrjMGP_AKRJ_P0048711100100
MGP_FVBNJ_G0023898mus_musculus_fvbnjMGP_FVBNJ_P004845397.967994.9733rattus_norvegicusENSRNOP0000002153898.177995.1768

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression