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RBP World!
Description
Ensembl ID | MGP_FVBNJ_G0023898 | Gene ID | Accession | - | |
Symbol | Msh2 | Alias | - | Full Name | mutS homolog 2 |
Status | Confidence | Length | 50047 bases | Strand | Plus strand |
Position | 17 : 86096014 - 86146060 | RNA binding domain | MutS_II | ||
Summary | N.A. |
RNA binding proteomes (RBPomes)
Pubmed ID | Full Name | Cell | Author | Time | Doi |
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Literatures on RNA binding capacity
Pubmed ID | Title | Author | Time | Journal |
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Transcripts
Name | Transcript ID | bp | Protein | Translation ID |
---|---|---|---|---|
Msh2-001 | MGP_FVBNJ_T0048453 | 3283 | 935aa | MGP_FVBNJ_P0048453"/note="transcript_id=MGP_FVBNJ_T0048453 |
- | MGP_FVBNJ_T0048454 | 1752 | No protein | - |
- | MGP_FVBNJ_T0048455 | 2502 | No protein | - |
- | MGP_FVBNJ_T0048456 | 630 | 209aa | MGP_FVBNJ_P0048456"/note="transcript_id=MGP_FVBNJ_T0048456 |
- | MGP_FVBNJ_T0048457 | 409 | No protein | - |
- | MGP_FVBNJ_T0048458 | 510 | 67aa | MGP_FVBNJ_P0048458"/note="transcript_id=MGP_FVBNJ_T0048458 |
Phenotypes
ensgID | Trait | pValue | Pubmed ID |
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GWAS
ensgID | SNP | Chromosome | Position | Trait | PubmedID | Or or BEAT | EFO ID |
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Protein-Protein Interaction (PPI)
Paralogs
Ensembl ID | Source | Target | ||||||
---|---|---|---|---|---|---|---|---|
Species | Protein ID | Perc_pos | Perc_id | Species | Protein ID | Perc_pos | Perc_id | |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0064074 | 38.7265 | 21.19 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 39.6791 | 21.7112 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048461 | 29.2342 | 17.673 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 42.4599 | 25.6684 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0046976 | 37.9352 | 21.4886 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 33.7968 | 19.1444 |
Orthologs
Ensembl ID | Source | Target | ||||||
---|---|---|---|---|---|---|---|---|
Species | Protein ID | Perc_pos | Perc_id | Species | Protein ID | Perc_pos | Perc_id | |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 99.5722 | 98.6096 | mus_caroli | MGP_CAROLIEiJ_P0045818 | 99.4658 | 98.5043 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0048773 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.8931 | mus_musculus_aj | MGP_AJ_P0048751 | 100 | 99.8931 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.8931 | mus_musculus_balbcj | MGP_BALBcJ_P0048712 | 100 | 99.8931 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0049204 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0048484 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.8931 | mus_musculus_cbaj | MGP_CBAJ_P0048383 | 100 | 99.8931 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.8931 | mus_musculus_c3hhej | MGP_C3HHeJ_P0048456 | 100 | 99.8931 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0048601 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 99.8931 | 99.7861 | mus_spretus | MGP_SPRETEiJ_P0047742 | 99.8931 | 99.7861 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0049304 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus | ENSMUSP00000024967 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.8931 | mus_musculus_pwkphj | MGP_PWKPhJ_P0048136 | 100 | 99.8931 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 98.8235 | 97.6471 | mus_pahari | MGP_PahariEiJ_P0045330 | 99.0354 | 97.8564 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 92.7273 | 92.2995 | mus_spicilegus | ENSMSIP00000011501 | 100 | 99.5386 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 99.4652 | mus_musculus_casteij | MGP_CASTEiJ_P0048538 | 100 | 99.4652 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0048456 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0047759 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0048711 | 100 | 100 |
MGP_FVBNJ_G0023898 | mus_musculus_fvbnj | MGP_FVBNJ_P0048453 | 97.9679 | 94.9733 | rattus_norvegicus | ENSRNOP00000021538 | 98.1779 | 95.1768 |
Gene Ontology
Go ID | Go term | No. evidence | Entries | Species | Category |
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