RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	MGP_FVBNJ_G0022906	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	92019 bases	Strand	Plus strand
Position	17 : 54566 - 146584	RNA binding domain	CID
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0045112	CID	PF04818	5e-26	1
MGP_FVBNJ_P0045111	CID	PF04818	5.1e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_FVBNJ_T0045111	4128	1021aa	MGP_FVBNJ_P0045111"/note="transcript_id=MGP_FVBNJ_T0045111
-	MGP_FVBNJ_T0045112	867	288aa	MGP_FVBNJ_P0045112"/note="transcript_id=MGP_FVBNJ_T0045112

Gene Model

Click here to download MGP_FVBNJ_G0022906's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0022906's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0044750	17.2185	14.3212	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	72.2222	60.0694

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	100	100	mus_musculus_aj	MGP_AJ_P0045383	25.6	25.6
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	72.2222	71.1806	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0045836	18.6882	18.4187
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	57.9861	56.25	mus_musculus_cbaj	MGP_CBAJ_P0045007	15.018	14.5683
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0045897	23.98	23.98
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	100	100	mus_musculus	ENSMUSP00000076024	22.7129	22.7129
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	86.1111	85.4167	mus_musculus_pwkphj	MGP_PWKPhJ_P0044787	20.9992	20.8298
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	97.2222	96.875	mus_spicilegus	ENSMSIP00000001797	22.1344	22.0553
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	73.2639	71.5278	mus_musculus_casteij	MGP_CASTEiJ_P0045216	82.7451	80.7843
MGP_FVBNJ_G0022906	mus_musculus_fvbnj	MGP_FVBNJ_P0045112	0	0	mus_musculus_wsbeij	MGP_WSBEiJ_P0044468	0	0

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression