Description

Ensembl ID MGP_FVBNJ_G0022833 Gene ID Accession -
Symbol Scaf4 Alias - Full Name SR-related CTD-associated factor 4
Status Confidence Length 54958 bases Strand Minus strand
Position 16 : 85940457 - 85995414 RNA binding domain RRM_1 , CID
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0044749 RRM_1 PF00076 9.7e-09 1
MGP_FVBNJ_P0044749 CID PF04818 1.1e-21 2
MGP_FVBNJ_P0044750 RRM_1 PF00076 9.9e-09 1
MGP_FVBNJ_P0044750 CID PF04818 1.1e-21 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Scaf4-201 MGP_FVBNJ_T0044749 4166 1182aa MGP_FVBNJ_P0044749"/note="transcript_id=MGP_FVBNJ_T0044749
- MGP_FVBNJ_T0044750 4162 1208aa MGP_FVBNJ_P0044750"/note="transcript_id=MGP_FVBNJ_T0044750

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004511272.222260.0694mus_musculus_fvbnjMGP_FVBNJ_P004475017.218514.3212

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475098.923898.3444mus_caroliMGP_CAROLIEiJ_P004221398.434997.8583
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_129s1svimjMGP_129S1SvImJ_P004503799.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_ajMGP_AJ_P004502199.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_balbcjMGP_BALBcJ_P004499599.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_c57bl6njMGP_C57BL6NJ_P004547399.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P0044750100100mus_musculus_dba2jMGP_DBA2J_P0044799100100
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P0044750100100mus_musculus_cbajMGP_CBAJ_P0044645100100
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_c3hhejMGP_C3HHeJ_P004473499.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculus_lpjMGP_LPJ_P004487299.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475098.427298.096mus_spretusMGP_SPRETEiJ_P004410998.508798.1773
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P0044750100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0045533100100
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.9172mus_musculusENSMUSP0000004447299.834699.8346
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.586199.5033mus_musculus_pwkphjMGP_PWKPhJ_P004443699.668699.5857
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475097.599396.6887mus_pahariMGP_PahariEiJ_P002957396.560295.6593
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.25599.0066mus_spicilegusENSMSIP0000002079799.090998.843
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.917299.8344mus_musculus_casteijMGP_CASTEiJ_P004485299.834699.7519
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P0044750100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0044731100100
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475099.503399.5033mus_musculus_wsbeijMGP_WSBEiJ_P004410299.833999.8339
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P0044750100100mus_musculus_akrjMGP_AKRJ_P0044990100100
MGP_FVBNJ_G0022833mus_musculus_fvbnjMGP_FVBNJ_P004475096.523294.702rattus_norvegicusENSRNOP0000004725895.10693.3116

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression