RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_FVBNJ_G0022833 | Gene ID |
|
Accession |
- |
Symbol |
Scaf4 |
Alias |
- |
Full Name |
SR-related CTD-associated factor 4 |
Status |
Confidence |
Length |
54958 bases |
Strand |
Minus strand |
Position |
16 : 85940457 - 85995414 |
RNA binding domain |
RRM_1 , CID |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_FVBNJ_P0044749 |
RRM_1 |
PF00076 |
9.7e-09 |
1 |
MGP_FVBNJ_P0044749 |
CID |
PF04818 |
1.1e-21 |
2 |
MGP_FVBNJ_P0044750 |
RRM_1 |
PF00076 |
9.9e-09 |
1 |
MGP_FVBNJ_P0044750 |
CID |
PF04818 |
1.1e-21 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Scaf4-201 |
MGP_FVBNJ_T0044749 |
4166 |
1182aa |
MGP_FVBNJ_P0044749"/note="transcript_id=MGP_FVBNJ_T0044749 |
- |
MGP_FVBNJ_T0044750 |
4162 |
1208aa |
MGP_FVBNJ_P0044750"/note="transcript_id=MGP_FVBNJ_T0044750 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0045112 | 72.2222 | 60.0694 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 17.2185 | 14.3212 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 98.9238 | 98.3444 | mus_caroli | MGP_CAROLIEiJ_P0042213 | 98.4349 | 97.8583 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0045037 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_aj | MGP_AJ_P0045021 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_balbcj | MGP_BALBcJ_P0044995 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0045473 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0044799 | 100 | 100 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0044645 | 100 | 100 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_c3hhej | MGP_C3HHeJ_P0044734 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus_lpj | MGP_LPJ_P0044872 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 98.4272 | 98.096 | mus_spretus | MGP_SPRETEiJ_P0044109 | 98.5087 | 98.1773 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0045533 | 100 | 100 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.9172 | mus_musculus | ENSMUSP00000044472 | 99.8346 | 99.8346 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.5861 | 99.5033 | mus_musculus_pwkphj | MGP_PWKPhJ_P0044436 | 99.6686 | 99.5857 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 97.5993 | 96.6887 | mus_pahari | MGP_PahariEiJ_P0029573 | 96.5602 | 95.6593 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.255 | 99.0066 | mus_spicilegus | ENSMSIP00000020797 | 99.0909 | 98.843 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.9172 | 99.8344 | mus_musculus_casteij | MGP_CASTEiJ_P0044852 | 99.8346 | 99.7519 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0044731 | 100 | 100 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 99.5033 | 99.5033 | mus_musculus_wsbeij | MGP_WSBEiJ_P0044102 | 99.8339 | 99.8339 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0044990 | 100 | 100 |
MGP_FVBNJ_G0022833 | mus_musculus_fvbnj | MGP_FVBNJ_P0044750 | 96.5232 | 94.702 | rattus_norvegicus | ENSRNOP00000047258 | 95.106 | 93.3116 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |