RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_FVBNJ_G0019410	Gene ID		Accession	-
Symbol	Pum2	Alias	-	Full Name	pumilio RNA-binding family member 2
Status	Confidence	Length	78811 bases	Strand	Plus strand
Position	12 : 5506625 - 5585435	RNA binding domain	PUF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	1
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	2
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	3
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	4
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	5
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	6
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	7
MGP_FVBNJ_P0034178	PUF	PF00806	5.3e-86	8
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	1
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	2
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	3
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	4
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	5
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	6
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	7
MGP_FVBNJ_P0034176	PUF	PF00806	5.6e-86	8
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	1
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	2
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	3
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	4
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	5
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	6
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	7
MGP_FVBNJ_P0034184	PUF	PF00806	5.6e-86	8
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	1
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	2
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	3
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	4
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	5
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	6
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	7
MGP_FVBNJ_P0034182	PUF	PF00806	6.9e-86	8
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	1
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	2
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	3
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	4
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	5
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	6
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	7
MGP_FVBNJ_P0034177	PUF	PF00806	1.1e-85	8
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	1
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	2
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	3
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	4
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	5
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	6
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	7
MGP_FVBNJ_P0034179	PUF	PF00806	1.1e-85	8
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	1
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	2
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	3
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	4
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	5
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	6
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	7
MGP_FVBNJ_P0034183	PUF	PF00806	3e-84	8
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	1
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	2
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	3
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	4
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	5
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	6
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	7
MGP_FVBNJ_P0034185	PUF	PF00806	3e-84	8
MGP_FVBNJ_P0034191	PUF	PF00806	1.1e-44	1
MGP_FVBNJ_P0034191	PUF	PF00806	1.1e-44	2
MGP_FVBNJ_P0034191	PUF	PF00806	1.1e-44	3
MGP_FVBNJ_P0034191	PUF	PF00806	1.1e-44	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Pum2-001	MGP_FVBNJ_T0034176	5866	985aa	MGP_FVBNJ_P0034176"/note="transcript_id=MGP_FVBNJ_T0034176
-	MGP_FVBNJ_T0034177	4975	1064aa	MGP_FVBNJ_P0034177"/note="transcript_id=MGP_FVBNJ_T0034177
-	MGP_FVBNJ_T0034178	3578	980aa	MGP_FVBNJ_P0034178"/note="transcript_id=MGP_FVBNJ_T0034178
-	MGP_FVBNJ_T0034179	6422	1064aa	MGP_FVBNJ_P0034179"/note="transcript_id=MGP_FVBNJ_T0034179
-	MGP_FVBNJ_T0034180	518	No protein	-
-	MGP_FVBNJ_T0034181	6209	35aa	MGP_FVBNJ_P0034181"/note="transcript_id=MGP_FVBNJ_T0034181
-	MGP_FVBNJ_T0034182	6301	1008aa	MGP_FVBNJ_P0034182"/note="transcript_id=MGP_FVBNJ_T0034182
-	MGP_FVBNJ_T0034183	3554	1066aa	MGP_FVBNJ_P0034183"/note="transcript_id=MGP_FVBNJ_T0034183
-	MGP_FVBNJ_T0034184	3286	985aa	MGP_FVBNJ_P0034184"/note="transcript_id=MGP_FVBNJ_T0034184
-	MGP_FVBNJ_T0034185	6217	1066aa	MGP_FVBNJ_P0034185"/note="transcript_id=MGP_FVBNJ_T0034185
-	MGP_FVBNJ_T0034186	902	262aa	MGP_FVBNJ_P0034186"/note="transcript_id=MGP_FVBNJ_T0034186
-	MGP_FVBNJ_T0034187	648	185aa	MGP_FVBNJ_P0034187"/note="transcript_id=MGP_FVBNJ_T0034187
-	MGP_FVBNJ_T0034188	472	109aa	MGP_FVBNJ_P0034188"/note="transcript_id=MGP_FVBNJ_T0034188
-	MGP_FVBNJ_T0034189	994	35aa	MGP_FVBNJ_P0034189"/note="transcript_id=MGP_FVBNJ_T0034189
-	MGP_FVBNJ_T0034190	706	234aa	MGP_FVBNJ_P0034190"/note="transcript_id=MGP_FVBNJ_T0034190
-	MGP_FVBNJ_T0034191	665	221aa	MGP_FVBNJ_P0034191"/note="transcript_id=MGP_FVBNJ_T0034191
-	MGP_FVBNJ_T0034192	612	No protein	-

Gene Model

Click here to download MGP_FVBNJ_G0019410's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0019410's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0067798	77.2918	70.143	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	86.2101	78.2364

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	99.6248	99.3433	mus_caroli	MGP_CAROLIEiJ_P0031885	99.6248	99.3433
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0034427	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_aj	MGP_AJ_P0034359	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0034355	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0034852	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_dba2j	MGP_DBA2J_P0034189	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_cbaj	MGP_CBAJ_P0034050	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0034137	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_lpj	MGP_LPJ_P0034328	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	99.9062	99.8124	mus_spretus	MGP_SPRETEiJ_P0033348	99.9062	99.8124
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0034901	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus	ENSMUSP00000128292	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_pwkphj	MGP_PWKPhJ_P0033734	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	99.8124	99.531	mus_pahari	MGP_PahariEiJ_P0082001	99.7188	99.4377
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	99.8124	99.7186	mus_spicilegus	ENSMSIP00000004869	100	99.906
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0034045	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0034191	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0033603	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	100	100	mus_musculus_akrj	MGP_AKRJ_P0034342	100	100
MGP_FVBNJ_G0019410	mus_musculus_fvbnj	MGP_FVBNJ_P0034185	99.7186	99.3433	rattus_norvegicus	ENSRNOP00000074592	99.6251	99.2502

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression