Description

Ensembl ID MGP_FVBNJ_G0017859 Gene ID Accession -
Symbol Tbrg4 Alias - Full Name transforming growth factor beta regulated gene 4
Status Confidence Length 13504 bases Strand Minus strand
Position 11 : 3527847 - 3541350 RNA binding domain RAP , FAST_2 , FAST_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_FVBNJ_P0027805 RAP PF08373 3.5e-10 1
MGP_FVBNJ_P0027805 FAST_2 PF08368 2.1e-25 2
MGP_FVBNJ_P0027805 FAST_1 PF06743 5.2e-21 3
MGP_FVBNJ_P0027806 RAP PF08373 3.5e-10 1
MGP_FVBNJ_P0027806 FAST_2 PF08368 2.1e-25 2
MGP_FVBNJ_P0027806 FAST_1 PF06743 5.2e-21 3
MGP_FVBNJ_P0027807 RAP PF08373 3.5e-10 1
MGP_FVBNJ_P0027807 FAST_2 PF08368 2.1e-25 2
MGP_FVBNJ_P0027807 FAST_1 PF06743 5.2e-21 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Tbrg4-001 MGP_FVBNJ_T0027805 2324 630aa MGP_FVBNJ_P0027805"/note="transcript_id=MGP_FVBNJ_T0027805
- MGP_FVBNJ_T0027806 2347 630aa MGP_FVBNJ_P0027806"/note="transcript_id=MGP_FVBNJ_T0027806
- MGP_FVBNJ_T0027807 2290 630aa MGP_FVBNJ_P0027807"/note="transcript_id=MGP_FVBNJ_T0027807
- MGP_FVBNJ_T0027808 2241 365aa MGP_FVBNJ_P0027808"/note="transcript_id=MGP_FVBNJ_T0027808
- MGP_FVBNJ_T0027809 682 No protein -
- MGP_FVBNJ_T0027810 582 No protein -
- MGP_FVBNJ_T0027811 602 No protein -
- MGP_FVBNJ_T0027812 652 No protein -
- MGP_FVBNJ_T0027813 380 No protein -
- MGP_FVBNJ_T0027814 647 158aa MGP_FVBNJ_P0027814"/note="transcript_id=MGP_FVBNJ_T0027814
- MGP_FVBNJ_T0027815 853 No protein -
- MGP_FVBNJ_T0027816 540 112aa MGP_FVBNJ_P0027816"/note="transcript_id=MGP_FVBNJ_T0027816

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P005485132.328116.0434mus_musculus_fvbnjMGP_FVBNJ_P002780642.539721.1111
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002006532.075514.6589mus_musculus_fvbnjMGP_FVBNJ_P002780635.079416.0317
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P005739626.765813.1351mus_musculus_fvbnjMGP_FVBNJ_P002780634.285716.8254
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P003725234.190618.003mus_musculus_fvbnjMGP_FVBNJ_P002780635.87318.8889
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P007009633.761517.7982mus_musculus_fvbnjMGP_FVBNJ_P002780629.206315.3968

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002780699.047698.254mus_caroliMGP_CAROLIEiJ_P002563299.047698.254
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0028016100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_ajMGP_AJ_P0027985100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_balbcjMGP_BALBcJ_P0027965100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0028462100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_dba2jMGP_DBA2J_P0027817100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_cbajMGP_CBAJ_P0027690100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_c3hhejMGP_C3HHeJ_P0027761100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_lpjMGP_LPJ_P0027933100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002780699.841399.6825mus_spretusMGP_SPRETEiJ_P002696999.841399.6825
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0028491100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculusENSMUSP00000140835100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_pwkphjMGP_PWKPhJ_P0027065100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002780698.571497.4603mus_pahariMGP_PahariEiJ_P003030998.728197.6153
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002780699.682598.8889mus_spicilegusENSMSIP0000002729599.682598.8889
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_casteijMGP_CASTEiJ_P0027369100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0027788100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_wsbeijMGP_WSBEiJ_P0027272100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P0027806100100mus_musculus_akrjMGP_AKRJ_P0027945100100
MGP_FVBNJ_G0017859mus_musculus_fvbnjMGP_FVBNJ_P002780696.507992.5397rattus_norvegicusENSRNOP0000007422396.661492.6868

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression