RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_FVBNJ_G0017859	Gene ID		Accession	-
Symbol	Tbrg4	Alias	-	Full Name	transforming growth factor beta regulated gene 4
Status	Confidence	Length	13504 bases	Strand	Minus strand
Position	11 : 3527847 - 3541350	RNA binding domain	RAP , FAST_2 , FAST_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_FVBNJ_P0027805	RAP	PF08373	3.5e-10	1
MGP_FVBNJ_P0027805	FAST_2	PF08368	2.1e-25	2
MGP_FVBNJ_P0027805	FAST_1	PF06743	5.2e-21	3
MGP_FVBNJ_P0027806	RAP	PF08373	3.5e-10	1
MGP_FVBNJ_P0027806	FAST_2	PF08368	2.1e-25	2
MGP_FVBNJ_P0027806	FAST_1	PF06743	5.2e-21	3
MGP_FVBNJ_P0027807	RAP	PF08373	3.5e-10	1
MGP_FVBNJ_P0027807	FAST_2	PF08368	2.1e-25	2
MGP_FVBNJ_P0027807	FAST_1	PF06743	5.2e-21	3

Showing 1 to 9 of 9 entries

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_FVBNJ_T0027806	2347	630aa	MGP_FVBNJ_P0027806"/note="transcript_id=MGP_FVBNJ_T0027806
-	MGP_FVBNJ_T0027807	2290	630aa	MGP_FVBNJ_P0027807"/note="transcript_id=MGP_FVBNJ_T0027807
-	MGP_FVBNJ_T0027808	2241	365aa	MGP_FVBNJ_P0027808"/note="transcript_id=MGP_FVBNJ_T0027808
-	MGP_FVBNJ_T0027809	682	No protein	-
-	MGP_FVBNJ_T0027810	582	No protein	-
-	MGP_FVBNJ_T0027811	602	No protein	-
-	MGP_FVBNJ_T0027812	652	No protein	-
-	MGP_FVBNJ_T0027813	380	No protein	-
-	MGP_FVBNJ_T0027814	647	158aa	MGP_FVBNJ_P0027814"/note="transcript_id=MGP_FVBNJ_T0027814
-	MGP_FVBNJ_T0027815	853	No protein	-

Showing 1 to 10 of 12 entries

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Gene Model

Click here to download MGP_FVBNJ_G0017859's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_FVBNJ_G0017859's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0054851	32.3281	16.0434	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	42.5397	21.1111
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0020065	32.0755	14.6589	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	35.0794	16.0317
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0057396	26.7658	13.1351	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	34.2857	16.8254
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0037252	34.1906	18.003	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	35.873	18.8889
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0070096	33.7615	17.7982	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	29.2063	15.3968

Showing 1 to 5 of 5 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	99.0476	98.254	mus_caroli	MGP_CAROLIEiJ_P0025632	99.0476	98.254
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0028016	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_aj	MGP_AJ_P0027985	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0027965	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0028462	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_dba2j	MGP_DBA2J_P0027817	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_cbaj	MGP_CBAJ_P0027690	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0027761	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	100	100	mus_musculus_lpj	MGP_LPJ_P0027933	100	100
MGP_FVBNJ_G0017859	mus_musculus_fvbnj	MGP_FVBNJ_P0027806	99.8413	99.6825	mus_spretus	MGP_SPRETEiJ_P0026969	99.8413	99.6825

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs