Description

Ensembl ID MGP_DBA2J_G0035663 Gene ID Accession -
Symbol Dkc1 Alias - Full Name dyskeratosis congenita 1, dyskerin
Status Confidence Length 13885 bases Strand Plus strand
Position X : 70613702 - 70627586 RNA binding domain PUA , TruB_N , DKCLD
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0096366 PUA PF01472 2.6e-17 1
MGP_DBA2J_P0096366 TruB_N PF01509 3.5e-20 2
MGP_DBA2J_P0096366 DKCLD PF08068 1.3e-31 3
MGP_DBA2J_P0096367 TruB_N PF01509 9e-20 1
MGP_DBA2J_P0096367 DKCLD PF08068 1.7e-31 2
MGP_DBA2J_P0096371 TruB_N PF01509 3.1e-12 1
MGP_DBA2J_P0096371 DKCLD PF08068 1.1e-31 2
MGP_DBA2J_P0096368 DKCLD PF08068 5.7e-32 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Dkc1-001 MGP_DBA2J_T0096366 2804 509aa MGP_DBA2J_P0096366"/note="transcript_id=MGP_DBA2J_T0096366
- MGP_DBA2J_T0096367 839 260aa MGP_DBA2J_P0096367"/note="transcript_id=MGP_DBA2J_T0096367
- MGP_DBA2J_T0096368 462 145aa MGP_DBA2J_P0096368"/note="transcript_id=MGP_DBA2J_T0096368
- MGP_DBA2J_T0096369 898 No protein -
- MGP_DBA2J_T0096370 541 No protein -
- MGP_DBA2J_T0096371 754 184aa MGP_DBA2J_P0096371"/note="transcript_id=MGP_DBA2J_T0096371
- MGP_DBA2J_T0096372 592 No protein -
- MGP_DBA2J_T0096373 963 No protein -
- MGP_DBA2J_T0096374 657 74aa MGP_DBA2J_P0096374"/note="transcript_id=MGP_DBA2J_T0096374
- MGP_DBA2J_T0096375 668 No protein -
- MGP_DBA2J_T0096376 551 No protein -
- MGP_DBA2J_T0096377 610 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0035663

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636689.587488.6051mus_caroliMGP_CAROLIEiJ_P009197095.798394.7479
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0096667100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_ajMGP_AJ_P0096764100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_balbcjMGP_BALBcJ_P0096683100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_c3hhejMGP_C3HHeJ_P0096233100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_casteijMGP_CASTEiJ_P0096817100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0097189100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_fvbnjMGP_FVBNJ_P0096200100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636697.838997.2495mus_pahariMGP_PahariEiJ_P008959897.45696.8689
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculusENSMUSP00000033776100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_cbajMGP_CBAJ_P0096150100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0097541100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636691.159182.5147rattus_norvegicusENSRNOP0000007400591.159182.5147
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_lpjMGP_LPJ_P0096388100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_wsbeijMGP_WSBEiJ_P0095199100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636618.271118.2711mus_spicilegusENSMSIP0000000223598.936298.9362
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636651.080651.0806mus_musculus_nodshiltjMGP_NODShiLtJ_P0096162100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_akrjMGP_AKRJ_P0096704100100
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P009636699.803599.6071mus_spretusMGP_SPRETEiJ_P009573199.607899.4118
MGP_DBA2J_G0035663mus_musculus_dba2jMGP_DBA2J_P0096366100100mus_musculus_pwkphjMGP_PWKPhJ_P0096224100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression