Description

Ensembl ID MGP_DBA2J_G0032807 Gene ID Accession -
Symbol Atxn2l Alias - Full Name ataxin 2-like
Status Confidence Length 11730 bases Strand Minus strand
Position 7 : 125288450 - 125300179 RNA binding domain LsmAD , PAM2 , SM-ATX
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0086223 LsmAD PF06741 4.7e-17 1
MGP_DBA2J_P0086223 PAM2 PF07145 2.2e-05 2
MGP_DBA2J_P0086223 SM-ATX PF14438 5.3e-17 3
MGP_DBA2J_P0086220 LsmAD PF06741 5.9e-17 1
MGP_DBA2J_P0086220 PAM2 PF07145 2.6e-05 2
MGP_DBA2J_P0086220 SM-ATX PF14438 1.5e-18 3
MGP_DBA2J_P0086219 LsmAD PF06741 6.4e-17 1
MGP_DBA2J_P0086219 PAM2 PF07145 2.7e-05 2
MGP_DBA2J_P0086219 SM-ATX PF14438 1.6e-18 3
MGP_DBA2J_P0086221 LsmAD PF06741 6.9e-17 1
MGP_DBA2J_P0086221 PAM2 PF07145 2.9e-05 2
MGP_DBA2J_P0086221 SM-ATX PF14438 1.7e-18 3
MGP_DBA2J_P0086224 SM-ATX PF14438 1.5e-19 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Atxn2l-001 MGP_DBA2J_T0086219 3853 1049aa MGP_DBA2J_P0086219"/note="transcript_id=MGP_DBA2J_T0086219
- MGP_DBA2J_T0086220 4023 994aa MGP_DBA2J_P0086220"/note="transcript_id=MGP_DBA2J_T0086220
- MGP_DBA2J_T0086221 3894 1096aa MGP_DBA2J_P0086221"/note="transcript_id=MGP_DBA2J_T0086221
- MGP_DBA2J_T0086222 503 144aa MGP_DBA2J_P0086222"/note="transcript_id=MGP_DBA2J_T0086222
- MGP_DBA2J_T0086223 2745 863aa MGP_DBA2J_P0086223"/note="transcript_id=MGP_DBA2J_T0086223
- MGP_DBA2J_T0086224 682 218aa MGP_DBA2J_P0086224"/note="transcript_id=MGP_DBA2J_T0086224

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P007377149.24936.1265mus_musculus_dba2jMGP_DBA2J_P008622156.843141.6971

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622199.452699.0876mus_caroliMGP_CAROLIEiJ_P008214499.543499.1781
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0086477100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_ajMGP_AJ_P0086560100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_balbcjMGP_BALBcJ_P0086522100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_c3hhejMGP_C3HHeJ_P0086082100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622199.908899.8175mus_musculus_casteijMGP_CASTEiJ_P008660199.908899.8175
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0087017100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_fvbnjMGP_FVBNJ_P0086061100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622199.361398.9051mus_pahariMGP_PahariEiJ_P001893399.361398.9051
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculusENSMUSP00000146023100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_cbajMGP_CBAJ_P0086024100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0087308100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622197.080396.4416rattus_norvegicusENSRNOP0000007061698.701398.0519
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_lpjMGP_LPJ_P0086255100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_wsbeijMGP_WSBEiJ_P0085122100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622199.908899.7263mus_spicilegusENSMSIP0000001938899.908899.7263
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0086101100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_akrjMGP_AKRJ_P0086499100100
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P008622199.908899.7263mus_spretusMGP_SPRETEiJ_P008554299.908899.7263
MGP_DBA2J_G0032807mus_musculus_dba2jMGP_DBA2J_P0086221100100mus_musculus_pwkphjMGP_PWKPhJ_P0086012100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression