Description

Ensembl ID MGP_DBA2J_G0031784 Gene ID Accession -
Symbol Hnrnpl Alias - Full Name heterogeneous nuclear ribonucleoprotein L
Status Confidence Length 13763 bases Strand Plus strand
Position 7 : 26709486 - 26723248 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0082408 RRM_5 PF13893 7.1e-58 1
MGP_DBA2J_P0082408 RRM_5 PF13893 7.1e-58 2
MGP_DBA2J_P0082408 RRM_8 PF11835 2.2e-11 3
MGP_DBA2J_P0082408 RRM_1 PF00076 4.7e-22 4
MGP_DBA2J_P0082408 RRM_1 PF00076 4.7e-22 5
MGP_DBA2J_P0082412 RRM_5 PF13893 7.1e-58 1
MGP_DBA2J_P0082412 RRM_5 PF13893 7.1e-58 2
MGP_DBA2J_P0082412 RRM_8 PF11835 2.2e-11 3
MGP_DBA2J_P0082412 RRM_1 PF00076 4.7e-22 4
MGP_DBA2J_P0082412 RRM_1 PF00076 4.7e-22 5
MGP_DBA2J_P0082413 RRM_5 PF13893 8.8e-58 1
MGP_DBA2J_P0082413 RRM_5 PF13893 8.8e-58 2
MGP_DBA2J_P0082413 RRM_8 PF11835 2.4e-11 3
MGP_DBA2J_P0082413 RRM_1 PF00076 6e-22 4
MGP_DBA2J_P0082413 RRM_1 PF00076 6e-22 5
MGP_DBA2J_P0082410 RRM_5 PF13893 7.4e-57 1
MGP_DBA2J_P0082410 RRM_5 PF13893 7.4e-57 2
MGP_DBA2J_P0082410 RRM_8 PF11835 1.6e-11 3
MGP_DBA2J_P0082410 RRM_1 PF00076 1e-16 4
MGP_DBA2J_P0082415 RRM_5 PF13893 1.1e-08 1
MGP_DBA2J_P0082415 RRM_8 PF11835 2.9e-12 2
MGP_DBA2J_P0082415 RRM_1 PF00076 4.5e-16 3
MGP_DBA2J_P0082415 RRM_1 PF00076 4.5e-16 4
MGP_DBA2J_P0082411 RRM_1 PF00076 1.3e-06 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Hnrnpl-001 MGP_DBA2J_T0082408 2673 586aa MGP_DBA2J_P0082408"/note="transcript_id=MGP_DBA2J_T0082408
- MGP_DBA2J_T0082409 2275 No protein -
- MGP_DBA2J_T0082410 1892 456aa MGP_DBA2J_P0082410"/note="transcript_id=MGP_DBA2J_T0082410
- MGP_DBA2J_T0082411 502 112aa MGP_DBA2J_P0082411"/note="transcript_id=MGP_DBA2J_T0082411
- MGP_DBA2J_T0082412 2136 586aa MGP_DBA2J_P0082412"/note="transcript_id=MGP_DBA2J_T0082412
- MGP_DBA2J_T0082413 2174 614aa MGP_DBA2J_P0082413"/note="transcript_id=MGP_DBA2J_T0082413
- MGP_DBA2J_T0082414 2426 No protein -
- MGP_DBA2J_T0082415 1844 201aa MGP_DBA2J_P0082415"/note="transcript_id=MGP_DBA2J_T0082415
- MGP_DBA2J_T0082416 504 No protein -
- MGP_DBA2J_T0082417 639 No protein -
- MGP_DBA2J_T0082418 1087 No protein -
- MGP_DBA2J_T0082419 768 No protein -
- MGP_DBA2J_T0082420 666 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P004836164.974652.2843mus_musculus_dba2jMGP_DBA2J_P008241362.540750.3257
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P006562541.877323.8267mus_musculus_dba2jMGP_DBA2J_P008241337.78521.4984
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P006316342.293224.812mus_musculus_dba2jMGP_DBA2J_P008241336.64521.4984
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P002588742.702724.3243mus_musculus_dba2jMGP_DBA2J_P008241338.599321.987
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P005186514.26198.67389mus_musculus_dba2jMGP_DBA2J_P008241327.850216.9381

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P008241399.837199.8371mus_caroliMGP_CAROLIEiJ_P007842898.394998.3949
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0082686100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_ajMGP_AJ_P0082755100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_balbcjMGP_BALBcJ_P0082714100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_c3hhejMGP_C3HHeJ_P0082310100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_casteijMGP_CASTEiJ_P0082825100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0083179100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P008241318.24118.241mus_musculus_fvbnjMGP_FVBNJ_P0082295100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_pahariMGP_PahariEiJ_P0015309100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculusENSMUSP0000013473499.837499.8374
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_cbajMGP_CBAJ_P0082256100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0083462100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P008241399.511499.3485rattus_norvegicusENSRNOP0000002742596.984196.8254
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_lpjMGP_LPJ_P0082436100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_wsbeijMGP_WSBEiJ_P0081354100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P008241393.973993.9739mus_spicilegusENSMSIP0000002757398.464298.4642
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0082315100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_akrjMGP_AKRJ_P0082686100100
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_spretusMGP_SPRETEiJ_P008173798.555498.5554
MGP_DBA2J_G0031784mus_musculus_dba2jMGP_DBA2J_P0082413100100mus_musculus_pwkphjMGP_PWKPhJ_P0082258100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression