RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_DBA2J_G0031784	Gene ID		Accession	-
Symbol	Hnrnpl	Alias	-	Full Name	heterogeneous nuclear ribonucleoprotein L
Status	Confidence	Length	13763 bases	Strand	Plus strand
Position	7 : 26709486 - 26723248	RNA binding domain	RRM_5 , RRM_8 , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_DBA2J_P0082408	RRM_5	PF13893	7.1e-58	1
MGP_DBA2J_P0082408	RRM_5	PF13893	7.1e-58	2
MGP_DBA2J_P0082408	RRM_8	PF11835	2.2e-11	3
MGP_DBA2J_P0082408	RRM_1	PF00076	4.7e-22	4
MGP_DBA2J_P0082408	RRM_1	PF00076	4.7e-22	5
MGP_DBA2J_P0082410	RRM_5	PF13893	7.4e-57	1
MGP_DBA2J_P0082410	RRM_5	PF13893	7.4e-57	2
MGP_DBA2J_P0082410	RRM_8	PF11835	1.6e-11	3
MGP_DBA2J_P0082410	RRM_1	PF00076	1e-16	4
MGP_DBA2J_P0082411	RRM_1	PF00076	1.3e-06	1
MGP_DBA2J_P0082412	RRM_5	PF13893	7.1e-58	1
MGP_DBA2J_P0082412	RRM_5	PF13893	7.1e-58	2
MGP_DBA2J_P0082412	RRM_8	PF11835	2.2e-11	3
MGP_DBA2J_P0082412	RRM_1	PF00076	4.7e-22	4
MGP_DBA2J_P0082412	RRM_1	PF00076	4.7e-22	5
MGP_DBA2J_P0082413	RRM_5	PF13893	8.8e-58	1
MGP_DBA2J_P0082413	RRM_5	PF13893	8.8e-58	2
MGP_DBA2J_P0082413	RRM_8	PF11835	2.4e-11	3
MGP_DBA2J_P0082413	RRM_1	PF00076	6e-22	4
MGP_DBA2J_P0082413	RRM_1	PF00076	6e-22	5
MGP_DBA2J_P0082415	RRM_5	PF13893	1.1e-08	1
MGP_DBA2J_P0082415	RRM_8	PF11835	2.9e-12	2
MGP_DBA2J_P0082415	RRM_1	PF00076	4.5e-16	3
MGP_DBA2J_P0082415	RRM_1	PF00076	4.5e-16	4

Showing 1 to 24 of 24 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_DBA2J_T0082409	2275	No protein	-
-	MGP_DBA2J_T0082410	1892	456aa	MGP_DBA2J_P0082410"/note="transcript_id=MGP_DBA2J_T0082410
-	MGP_DBA2J_T0082411	502	112aa	MGP_DBA2J_P0082411"/note="transcript_id=MGP_DBA2J_T0082411
-	MGP_DBA2J_T0082412	2136	586aa	MGP_DBA2J_P0082412"/note="transcript_id=MGP_DBA2J_T0082412
-	MGP_DBA2J_T0082413	2174	614aa	MGP_DBA2J_P0082413"/note="transcript_id=MGP_DBA2J_T0082413
-	MGP_DBA2J_T0082414	2426	No protein	-
-	MGP_DBA2J_T0082415	1844	201aa	MGP_DBA2J_P0082415"/note="transcript_id=MGP_DBA2J_T0082415
-	MGP_DBA2J_T0082416	504	No protein	-
-	MGP_DBA2J_T0082417	639	No protein	-
-	MGP_DBA2J_T0082418	1087	No protein	-

Showing 1 to 10 of 13 entries

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Gene Model

Click here to download MGP_DBA2J_G0031784's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download MGP_DBA2J_G0031784's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0048361	64.9746	52.2843	mus_musculus_dba2j	MGP_DBA2J_P0082413	62.5407	50.3257
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0065625	41.8773	23.8267	mus_musculus_dba2j	MGP_DBA2J_P0082413	37.785	21.4984
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0063163	42.2932	24.812	mus_musculus_dba2j	MGP_DBA2J_P0082413	36.645	21.4984
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0025887	42.7027	24.3243	mus_musculus_dba2j	MGP_DBA2J_P0082413	38.5993	21.987
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0051865	14.2619	8.67389	mus_musculus_dba2j	MGP_DBA2J_P0082413	27.8502	16.9381

Showing 1 to 5 of 5 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	99.8371	99.8371	mus_caroli	MGP_CAROLIEiJ_P0078428	98.3949	98.3949
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0082686	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_aj	MGP_AJ_P0082755	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0082714	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0082310	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0082825	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0083179	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	18.241	18.241	mus_musculus_fvbnj	MGP_FVBNJ_P0082295	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_pahari	MGP_PahariEiJ_P0015309	100	100
MGP_DBA2J_G0031784	mus_musculus_dba2j	MGP_DBA2J_P0082413	100	100	mus_musculus	ENSMUSP00000134734	99.8374	99.8374

Showing 1 to 10 of 20 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression