Description

Ensembl ID MGP_DBA2J_G0028152 Gene ID Accession -
Symbol Ptbp3 Alias - Full Name polypyrimidine tract binding protein 3
Status Confidence Length 76441 bases Strand Minus strand
Position 4 : 56033348 - 56109788 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0065626 RRM_5 PF13893 1.9e-64 1
MGP_DBA2J_P0065626 RRM_5 PF13893 1.9e-64 2
MGP_DBA2J_P0065626 RRM_5 PF13893 1.9e-64 3
MGP_DBA2J_P0065626 RRM_8 PF11835 6.6e-15 4
MGP_DBA2J_P0065626 RRM_1 PF00076 4.6e-30 5
MGP_DBA2J_P0065626 RRM_1 PF00076 4.6e-30 6
MGP_DBA2J_P0065626 RRM_1 PF00076 4.6e-30 7
MGP_DBA2J_P0065625 RRM_5 PF13893 2e-64 1
MGP_DBA2J_P0065625 RRM_5 PF13893 2e-64 2
MGP_DBA2J_P0065625 RRM_5 PF13893 2e-64 3
MGP_DBA2J_P0065625 RRM_8 PF11835 6.7e-15 4
MGP_DBA2J_P0065625 RRM_1 PF00076 4.8e-30 5
MGP_DBA2J_P0065625 RRM_1 PF00076 4.8e-30 6
MGP_DBA2J_P0065625 RRM_1 PF00076 4.8e-30 7
MGP_DBA2J_P0065628 RRM_5 PF13893 7e-50 1
MGP_DBA2J_P0065628 RRM_1 PF00076 1.6e-07 2
MGP_DBA2J_P0065631 RRM_5 PF13893 2.1e-06 1
MGP_DBA2J_P0065631 RRM_8 PF11835 1e-15 2
MGP_DBA2J_P0065631 RRM_1 PF00076 2e-11 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptbp3-001 MGP_DBA2J_T0065625 6677 554aa MGP_DBA2J_P0065625"/note="transcript_id=MGP_DBA2J_T0065625
- MGP_DBA2J_T0065626 3409 551aa MGP_DBA2J_P0065626"/note="transcript_id=MGP_DBA2J_T0065626
- MGP_DBA2J_T0065627 669 No protein -
- MGP_DBA2J_T0065628 566 188aa MGP_DBA2J_P0065628"/note="transcript_id=MGP_DBA2J_T0065628
- MGP_DBA2J_T0065629 1286 45aa MGP_DBA2J_P0065629"/note="transcript_id=MGP_DBA2J_T0065629
- MGP_DBA2J_T0065630 558 41aa MGP_DBA2J_P0065630"/note="transcript_id=MGP_DBA2J_T0065630
- MGP_DBA2J_T0065631 550 146aa MGP_DBA2J_P0065631"/note="transcript_id=MGP_DBA2J_T0065631
- MGP_DBA2J_T0065632 447 No protein -
- MGP_DBA2J_T0065633 606 104aa MGP_DBA2J_P0065633"/note="transcript_id=MGP_DBA2J_T0065633

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P002588787.747778.5586mus_musculus_dba2jMGP_DBA2J_P006562587.906178.7004
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006316386.090271.8045mus_musculus_dba2jMGP_DBA2J_P006562582.671568.9531
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P004836138.578722.335mus_musculus_dba2jMGP_DBA2J_P006562541.155223.8267
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P008241337.78521.4984mus_musculus_dba2jMGP_DBA2J_P006562541.877323.8267
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P005186515.84659.34112mus_musculus_dba2jMGP_DBA2J_P006562534.29620.2166

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006562599.819599.8195mus_caroliMGP_CAROLIEiJ_P006254099.819599.8195
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0065892100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_ajMGP_AJ_P0065945100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_balbcjMGP_BALBcJ_P0065871100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_c3hhejMGP_C3HHeJ_P0065542100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_casteijMGP_CASTEiJ_P0065875100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006562599.63999.639mus_musculus_c57bl6njMGP_C57BL6NJ_P006634699.280699.2806
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_fvbnjMGP_FVBNJ_P0065551100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006562510099.639mus_pahariMGP_PahariEiJ_P007767610099.639
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculusENSMUSP00000133612100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_cbajMGP_CBAJ_P0065490100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0066520100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006562597.292496.3899rattus_norvegicusENSRNOP0000006935499.630398.7061
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_lpjMGP_LPJ_P0065726100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_wsbeijMGP_WSBEiJ_P0064746100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P006562599.63999.639mus_spicilegusENSMSIP0000002414999.280699.2806
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0065533100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_akrjMGP_AKRJ_P0065835100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_spretusMGP_SPRETEiJ_P0065013100100
MGP_DBA2J_G0028152mus_musculus_dba2jMGP_DBA2J_P0065625100100mus_musculus_pwkphjMGP_PWKPhJ_P0065427100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression