Description

Ensembl ID MGP_DBA2J_G0027643 Gene ID Accession -
Symbol Ptbp2 Alias - Full Name polypyrimidine tract binding protein 2
Status Confidence Length 65803 bases Strand Minus strand
Position 3 : 116985783 - 117051585 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0063163 RRM_5 PF13893 1.7e-55 1
MGP_DBA2J_P0063163 RRM_5 PF13893 1.7e-55 2
MGP_DBA2J_P0063163 RRM_5 PF13893 1.7e-55 3
MGP_DBA2J_P0063163 RRM_8 PF11835 1.4e-15 4
MGP_DBA2J_P0063163 RRM_1 PF00076 2.3e-31 5
MGP_DBA2J_P0063163 RRM_1 PF00076 2.3e-31 6
MGP_DBA2J_P0063163 RRM_1 PF00076 2.3e-31 7
MGP_DBA2J_P0063164 RRM_5 PF13893 2.2e-54 1
MGP_DBA2J_P0063164 RRM_5 PF13893 2.2e-54 2
MGP_DBA2J_P0063164 RRM_8 PF11835 1.4e-15 3
MGP_DBA2J_P0063164 RRM_1 PF00076 1e-31 4
MGP_DBA2J_P0063164 RRM_1 PF00076 1e-31 5
MGP_DBA2J_P0063164 RRM_1 PF00076 1e-31 6
MGP_DBA2J_P0063169 RRM_5 PF13893 1.4e-21 1
MGP_DBA2J_P0063165 RRM_5 PF13893 3.3e-11 1
MGP_DBA2J_P0063165 RRM_8 PF11835 2.3e-15 2
MGP_DBA2J_P0063165 RRM_1 PF00076 1.3e-12 3
MGP_DBA2J_P0063171 RRM_8 PF11835 1.4e-08 1
MGP_DBA2J_P0063171 RRM_1 PF00076 5.3e-10 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptbp2-001 MGP_DBA2J_T0063163 3365 532aa MGP_DBA2J_P0063163"/note="transcript_id=MGP_DBA2J_T0063163
- MGP_DBA2J_T0063164 3774 531aa MGP_DBA2J_P0063164"/note="transcript_id=MGP_DBA2J_T0063164
- MGP_DBA2J_T0063165 1598 356aa MGP_DBA2J_P0063165"/note="transcript_id=MGP_DBA2J_T0063165
- MGP_DBA2J_T0063166 576 33aa MGP_DBA2J_P0063166"/note="transcript_id=MGP_DBA2J_T0063166
- MGP_DBA2J_T0063167 937 No protein -
- MGP_DBA2J_T0063168 491 No protein -
- MGP_DBA2J_T0063169 465 155aa MGP_DBA2J_P0063169"/note="transcript_id=MGP_DBA2J_T0063169
- MGP_DBA2J_T0063170 4047 No protein -
- MGP_DBA2J_T0063171 1742 241aa MGP_DBA2J_P0063171"/note="transcript_id=MGP_DBA2J_T0063171
- MGP_DBA2J_T0063172 654 No protein -
- MGP_DBA2J_T0063173 478 No protein -
- MGP_DBA2J_T0063174 454 No protein -
- MGP_DBA2J_T0063175 389 49aa MGP_DBA2J_P0063175"/note="transcript_id=MGP_DBA2J_T0063175

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P006562582.671568.9531mus_musculus_dba2jMGP_DBA2J_P006316386.090271.8045
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P002588782.522570.8108mus_musculus_dba2jMGP_DBA2J_P006316386.090273.8722
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P004836138.917123.181mus_musculus_dba2jMGP_DBA2J_P006316343.233125.7519
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P008241336.64521.4984mus_musculus_dba2jMGP_DBA2J_P006316342.293224.812
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P005186515.09598.8407mus_musculus_dba2jMGP_DBA2J_P006316334.022619.9248

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P006316310099.812mus_caroliMGP_CAROLIEiJ_P006019910099.812
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0063453100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_ajMGP_AJ_P0063477100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_balbcjMGP_BALBcJ_P0063403100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_c3hhejMGP_C3HHeJ_P0063090100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P006316397.932397.9323mus_musculus_casteijMGP_CASTEiJ_P0063390100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0063893100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_fvbnjMGP_FVBNJ_P0063127100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_pahariMGP_PahariEiJ_P0071135100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculusENSMUSP00000029780100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_cbajMGP_CBAJ_P0063052100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0064109100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P006316396.804596.0526rattus_norvegicusENSRNOP0000001503696.622995.8724
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_lpjMGP_LPJ_P0063306100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_wsbeijMGP_WSBEiJ_P0062354100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_spicilegusENSMSIP00000020820100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0063121100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_akrjMGP_AKRJ_P0063411100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_spretusMGP_SPRETEiJ_P0062591100100
MGP_DBA2J_G0027643mus_musculus_dba2jMGP_DBA2J_P0063163100100mus_musculus_pwkphjMGP_PWKPhJ_P0062935100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression