Description

Ensembl ID MGP_DBA2J_G0027630 Gene ID Accession -
Symbol Trmt13 Alias - Full Name tRNA methyltransferase 13
Status Confidence Length 40877 bases Strand Minus strand
Position 3 : 113838669 - 113879545 RNA binding domain TRM13 , zf-TRM13_CCCH , zf-U11-48K
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0063099 TRM13 PF05206 6e-95 1
MGP_DBA2J_P0063099 zf-TRM13_CCCH PF11722 4.2e-13 2
MGP_DBA2J_P0063099 zf-U11-48K PF05253 5.2e-09 3
MGP_DBA2J_P0063100 TRM13 PF05206 7.1e-40 1
MGP_DBA2J_P0063100 zf-TRM13_CCCH PF11722 8.6e-14 2
MGP_DBA2J_P0063100 zf-U11-48K PF05253 2.5e-09 3
MGP_DBA2J_P0063104 TRM13 PF05206 2.1e-18 1
MGP_DBA2J_P0063107 zf-TRM13_CCCH PF11722 5.1e-14 1
MGP_DBA2J_P0063101 zf-TRM13_CCCH PF11722 6e-14 1
MGP_DBA2J_P0063101 zf-U11-48K PF05253 1.2e-09 2
MGP_DBA2J_P0063105 zf-U11-48K PF05253 3.9e-10 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Trmt13-001 MGP_DBA2J_T0063099 3402 481aa MGP_DBA2J_P0063099"/note="transcript_id=MGP_DBA2J_T0063099
- MGP_DBA2J_T0063100 1616 292aa MGP_DBA2J_P0063100"/note="transcript_id=MGP_DBA2J_T0063100
- MGP_DBA2J_T0063101 1723 176aa MGP_DBA2J_P0063101"/note="transcript_id=MGP_DBA2J_T0063101
- MGP_DBA2J_T0063102 865 No protein -
- MGP_DBA2J_T0063103 1991 No protein -
- MGP_DBA2J_T0063104 538 179aa MGP_DBA2J_P0063104"/note="transcript_id=MGP_DBA2J_T0063104
- MGP_DBA2J_T0063105 459 64aa MGP_DBA2J_P0063105"/note="transcript_id=MGP_DBA2J_T0063105
- MGP_DBA2J_T0063106 686 No protein -
- MGP_DBA2J_T0063107 880 145aa MGP_DBA2J_P0063107"/note="transcript_id=MGP_DBA2J_T0063107
- MGP_DBA2J_T0063113 291 No protein -
- MGP_DBA2J_T0063115 869 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0027630

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309998.960597.921mus_caroliMGP_CAROLIEiJ_P006013298.960597.921
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.792199.7921mus_musculus_129s1svimjMGP_129S1SvImJ_P006338899.792199.7921
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_ajMGP_AJ_P006341299.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_balbcjMGP_BALBcJ_P006333799.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_c3hhejMGP_C3HHeJ_P006302599.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309998.960598.7526mus_musculus_casteijMGP_CASTEiJ_P006332598.960598.7526
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.792199.5842mus_musculus_c57bl6njMGP_C57BL6NJ_P006382799.792199.5842
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_fvbnjMGP_FVBNJ_P006306399.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309998.752696.4657mus_pahariMGP_PahariEiJ_P007107498.752696.4657
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.792199.5842mus_musculusENSMUSP0000004732099.792199.5842
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_cbajMGP_CBAJ_P006298799.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P0063099100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0064046100100
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309996.673694.3867rattus_norvegicusENSRNOP0000006231493.939491.7172
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.792199.7921mus_musculus_lpjMGP_LPJ_P006324199.792199.7921
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.168498.9605mus_musculus_wsbeijMGP_WSBEiJ_P006228999.168498.9605
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.584298.9605mus_spicilegusENSMSIP0000000632699.584298.9605
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.792199.7921mus_musculus_nodshiltjMGP_NODShiLtJ_P006305599.792199.7921
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.3763mus_musculus_akrjMGP_AKRJ_P006334799.376399.3763
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309998.544798.3368mus_spretusMGP_SPRETEiJ_P006252398.544798.3368
MGP_DBA2J_G0027630mus_musculus_dba2jMGP_DBA2J_P006309999.376399.1684mus_musculus_pwkphjMGP_PWKPhJ_P006287099.376399.1684

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression