RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_DBA2J_G0026620	Gene ID		Accession	-
Symbol	Rprd1b	Alias	-	Full Name	regulation of nuclear pre-mRNA domain containing 1B
Status	Confidence	Length	105209 bases	Strand	Plus strand
Position	2 : 155719146 - 155824354	RNA binding domain	CREPT , CID
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_DBA2J_P0058626	CREPT	PF16566	6e-65	1
MGP_DBA2J_P0058626	CID	PF04818	1.5e-36	2
MGP_DBA2J_P0058629	CREPT	PF16566	1.9e-37	1
MGP_DBA2J_P0058629	CID	PF04818	9.4e-37	2
MGP_DBA2J_P0058630	CREPT	PF16566	6.1e-65	1
MGP_DBA2J_P0058630	CID	PF04818	1.5e-36	2
MGP_DBA2J_P0058631	CREPT	PF16566	9.1e-14	1
MGP_DBA2J_P0058631	CID	PF04818	5.2e-37	2
MGP_DBA2J_P0058632	CREPT	PF16566	3.6e-38	1
MGP_DBA2J_P0058633	CREPT	PF16566	1.5e-37	1

Showing 1 to 10 of 10 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	MGP_DBA2J_T0058627	1597	No protein	-
-	MGP_DBA2J_T0058628	4173	No protein	-
-	MGP_DBA2J_T0058629	4393	294aa	MGP_DBA2J_P0058629"/note="transcript_id=MGP_DBA2J_T0058629
-	MGP_DBA2J_T0058630	4277	326aa	MGP_DBA2J_P0058630"/note="transcript_id=MGP_DBA2J_T0058630
-	MGP_DBA2J_T0058631	1910	224aa	MGP_DBA2J_P0058631"/note="transcript_id=MGP_DBA2J_T0058631
-	MGP_DBA2J_T0058632	764	193aa	MGP_DBA2J_P0058632"/note="transcript_id=MGP_DBA2J_T0058632
-	MGP_DBA2J_T0058633	428	142aa	MGP_DBA2J_P0058633"/note="transcript_id=MGP_DBA2J_T0058633
Rprd1b-001	MGP_DBA2J_T0058626	4498	325aa	MGP_DBA2J_P0058626"/note="transcript_id=MGP_DBA2J_T0058626

Showing 1 to 8 of 8 entries

Gene Model

Click here to download MGP_DBA2J_G0026620's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_DBA2J_G0026620's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0048851	84.6154	68.5897	mus_musculus_dba2j	MGP_DBA2J_P0058630	80.9816	65.6442
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0062195	10.6195	6.05854	mus_musculus_dba2j	MGP_DBA2J_P0058630	47.8528	27.3006

Showing 1 to 2 of 2 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_caroli	MGP_CAROLIEiJ_P0055814	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	68.0982	68.0982	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0058902	99.1071	99.1071
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_aj	MGP_AJ_P0058923	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0058859	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0058561	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_casteij	MGP_CASTEiJ_P0058824	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0059334	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0058615	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_pahari	MGP_PahariEiJ_P0066795	100	100
MGP_DBA2J_G0026620	mus_musculus_dba2j	MGP_DBA2J_P0058630	100	100	mus_musculus	ENSMUSP00000029180	100	100

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs