Description

Ensembl ID MGP_DBA2J_G0026316 Gene ID Accession -
Symbol Polr1b Alias - Full Name polymerase (RNA) I polypeptide B
Status Confidence Length 26096 bases Strand Plus strand
Position 2 : 126496641 - 126522736 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0057312 RNA_pol_Rpb2_1 PF04563 3.5e-34 1
MGP_DBA2J_P0057312 RNA_pol_Rpa2_4 PF06883 4e-20 2
MGP_DBA2J_P0057312 RNA_pol_Rpb2_3 PF04565 3.4e-29 3
MGP_DBA2J_P0057312 RNA_pol_Rpb2_2 PF04561 7.9e-10 4
MGP_DBA2J_P0057311 RNA_pol_Rpb2_1 PF04563 8.1e-34 1
MGP_DBA2J_P0057311 RNA_pol_Rpa2_4 PF06883 6.7e-20 2
MGP_DBA2J_P0057311 RNA_pol_Rpb2_3 PF04565 1.3e-28 3
MGP_DBA2J_P0057311 RNA_pol_Rpb2_7 PF04560 1.1e-21 4
MGP_DBA2J_P0057311 RNA_pol_Rpb2_2 PF04561 1.4e-09 5
MGP_DBA2J_P0057311 RNA_pol_Rpb2_6 PF00562 1.5e-117 6
MGP_DBA2J_P0057313 RNA_pol_Rpb2_1 PF04563 8.1e-34 1
MGP_DBA2J_P0057313 RNA_pol_Rpa2_4 PF06883 6.7e-20 2
MGP_DBA2J_P0057313 RNA_pol_Rpb2_3 PF04565 1.3e-28 3
MGP_DBA2J_P0057313 RNA_pol_Rpb2_7 PF04560 1.1e-21 4
MGP_DBA2J_P0057313 RNA_pol_Rpb2_2 PF04561 1.4e-09 5
MGP_DBA2J_P0057313 RNA_pol_Rpb2_6 PF00562 1.5e-117 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr1b-001 MGP_DBA2J_T0057311 3990 1135aa MGP_DBA2J_P0057311"/note="transcript_id=MGP_DBA2J_T0057311
- MGP_DBA2J_T0057312 2769 754aa MGP_DBA2J_P0057312"/note="transcript_id=MGP_DBA2J_T0057312
- MGP_DBA2J_T0057313 3408 1135aa MGP_DBA2J_P0057313"/note="transcript_id=MGP_DBA2J_T0057313
- MGP_DBA2J_T0057314 655 No protein -
- MGP_DBA2J_T0057315 612 No protein -
- MGP_DBA2J_T0057316 734 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P002644047.396331.2445mus_musculus_dba2jMGP_DBA2J_P005731147.312831.1894
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P007204844.633729.3867mus_musculus_dba2jMGP_DBA2J_P005731146.167430.3965

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731194.449393.5683mus_caroliMGP_CAROLIEiJ_P005452699.443498.5158
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731199.735799.3833mus_musculus_129s1svimjMGP_129S1SvImJ_P005758096.669596.3279
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.7357mus_musculus_ajMGP_AJ_P005761210099.7357
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731195.594795.1542mus_musculus_balbcjMGP_BALBcJ_P005755199.541399.0826
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_c3hhejMGP_C3HHeJ_P005724310099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_casteijMGP_CASTEiJ_P005748510099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731195.594794.8899mus_musculus_c57bl6njMGP_C57BL6NJ_P005802499.086898.3562
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_fvbnjMGP_FVBNJ_P005728810099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731198.766596.7401mus_pahariMGP_PahariEiJ_P006550598.766596.7401
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.7357mus_musculusENSMUSP0000009949410099.7357
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_cbajMGP_CBAJ_P005721410099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_nzohlltjMGP_NZOHlLtJ_P005818910099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731198.678495.4185rattus_norvegicusENSRNOP0000002488298.678495.4185
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_lpjMGP_LPJ_P005744610099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731199.911999.7357mus_musculus_wsbeijMGP_WSBEiJ_P005654399.911999.7357
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731199.735799.4714mus_spicilegusENSMSIP0000002108999.735799.4714
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_nodshiltjMGP_NODShiLtJ_P005725810099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.8238mus_musculus_akrjMGP_AKRJ_P005756110099.8238
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731199.823899.5595mus_spretusMGP_SPRETEiJ_P005663599.823899.5595
MGP_DBA2J_G0026316mus_musculus_dba2jMGP_DBA2J_P005731110099.9119mus_musculus_pwkphjMGP_PWKPhJ_P005707210099.9119

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression