Description

Ensembl ID MGP_DBA2J_G0024235 Gene ID Accession -
Symbol Ythdc2 Alias - Full Name YTH domain containing 2
Status Confidence Length 60457 bases Strand Plus strand
Position 18 : 41629442 - 41689898 RNA binding domain DEAD , R3H , HA2 , YTH , OB_NTP_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0049318 DEAD PF00270 2.5e-09 1
MGP_DBA2J_P0049318 R3H PF01424 1.6e-10 2
MGP_DBA2J_P0049318 HA2 PF04408 7.4e-18 3
MGP_DBA2J_P0049318 YTH PF04146 9.8e-43 4
MGP_DBA2J_P0049318 YTH PF04146 9.8e-43 5
MGP_DBA2J_P0049318 OB_NTP_bind PF07717 4.6e-11 6
MGP_DBA2J_P0049320 HA2 PF04408 1.3e-18 1
MGP_DBA2J_P0049320 OB_NTP_bind PF07717 2e-11 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ythdc2-001 MGP_DBA2J_T0049318 7070 1445aa MGP_DBA2J_P0049318"/note="transcript_id=MGP_DBA2J_T0049318
- MGP_DBA2J_T0049319 1331 No protein -
- MGP_DBA2J_T0049320 4160 585aa MGP_DBA2J_P0049320"/note="transcript_id=MGP_DBA2J_T0049320

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P003795437.875524.4689mus_musculus_dba2jMGP_DBA2J_P004931835.778523.1142
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P008697442.476722.3702mus_musculus_dba2jMGP_DBA2J_P004931822.076111.6263
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004837640.374526.8165mus_musculus_dba2jMGP_DBA2J_P004931837.30124.7751
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P003019447.277928.0802mus_musculus_dba2jMGP_DBA2J_P004931822.837413.564
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P003581134.417921.0412mus_musculus_dba2jMGP_DBA2J_P004931832.941220.1384
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P002249338.800626.5896mus_musculus_dba2jMGP_DBA2J_P004931837.162625.4671
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P005868348.364228.3073mus_musculus_dba2jMGP_DBA2J_P004931823.529413.7716
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P007427331.826119.7391mus_musculus_dba2jMGP_DBA2J_P004931825.328715.7093
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004721836.302722.2222mus_musculus_dba2jMGP_DBA2J_P004931826.228416.0554
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P003239531.86217.8973mus_musculus_dba2jMGP_DBA2J_P004931827.47415.4325
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P007139045.157227.7987mus_musculus_dba2jMGP_DBA2J_P004931824.844315.2941
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P008148136.244523.7555mus_musculus_dba2jMGP_DBA2J_P004931828.719718.8235
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P009453837.694225.184mus_musculus_dba2jMGP_DBA2J_P004931831.903121.3149
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P006073651.733.9mus_musculus_dba2jMGP_DBA2J_P004931835.778523.4602
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P009012631.840419.2182mus_musculus_dba2jMGP_DBA2J_P004931827.058816.3322
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P007800540.947122.8412mus_musculus_dba2jMGP_DBA2J_P004931820.34611.3495
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P003125543.260624.0051mus_musculus_dba2jMGP_DBA2J_P004931823.321812.9412
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P002702122.998112.3836mus_musculus_dba2jMGP_DBA2J_P004931817.09349.20415

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004931899.930899.9308mus_caroliMGP_CAROLIEiJ_P004666399.930899.9308
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0049617100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_ajMGP_AJ_P0049599100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_balbcjMGP_BALBcJ_P0049559100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_c3hhejMGP_C3HHeJ_P0049293100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_casteijMGP_CASTEiJ_P0049399100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0050044100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_fvbnjMGP_FVBNJ_P0049293100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004931899.65499.5156mus_pahariMGP_PahariEiJ_P003925299.72399.5845
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculusENSMUSP00000048340100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_cbajMGP_CBAJ_P0049222100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0050158100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004931898.892798.6851rattus_norvegicusENSRNOP0000007822599.651399.4421
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_lpjMGP_LPJ_P0049443100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_wsbeijMGP_WSBEiJ_P0048586100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004931899.792499.7232mus_spicilegusENSMSIP0000002883799.930799.8614
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_nodshiltjMGP_NODShiLtJ_P004929397.833497.8334
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_akrjMGP_AKRJ_P0049559100100
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P004931899.65499.654mus_spretusMGP_SPRETEiJ_P004859199.861399.8613
MGP_DBA2J_G0024235mus_musculus_dba2jMGP_DBA2J_P0049318100100mus_musculus_pwkphjMGP_PWKPhJ_P0048996100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression