RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_DBA2J_G0024235 | Gene ID |
|
Accession |
- |
Symbol |
Ythdc2 |
Alias |
- |
Full Name |
YTH domain containing 2 |
Status |
Confidence |
Length |
60457 bases |
Strand |
Plus strand |
Position |
18 : 41629442 - 41689898 |
RNA binding domain |
DEAD , R3H , HA2 , YTH , OB_NTP_bind |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_DBA2J_P0049318 |
DEAD |
PF00270 |
2.5e-09 |
1 |
MGP_DBA2J_P0049318 |
R3H |
PF01424 |
1.6e-10 |
2 |
MGP_DBA2J_P0049318 |
HA2 |
PF04408 |
7.4e-18 |
3 |
MGP_DBA2J_P0049318 |
YTH |
PF04146 |
9.8e-43 |
4 |
MGP_DBA2J_P0049318 |
YTH |
PF04146 |
9.8e-43 |
5 |
MGP_DBA2J_P0049318 |
OB_NTP_bind |
PF07717 |
4.6e-11 |
6 |
MGP_DBA2J_P0049320 |
HA2 |
PF04408 |
1.3e-18 |
1 |
MGP_DBA2J_P0049320 |
OB_NTP_bind |
PF07717 |
2e-11 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Ythdc2-001 |
MGP_DBA2J_T0049318 |
7070 |
1445aa |
MGP_DBA2J_P0049318"/note="transcript_id=MGP_DBA2J_T0049318 |
- |
MGP_DBA2J_T0049319 |
1331 |
No protein |
- |
- |
MGP_DBA2J_T0049320 |
4160 |
585aa |
MGP_DBA2J_P0049320"/note="transcript_id=MGP_DBA2J_T0049320 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0037954 | 37.8755 | 24.4689 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 35.7785 | 23.1142 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0086974 | 42.4767 | 22.3702 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 22.0761 | 11.6263 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0048376 | 40.3745 | 26.8165 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 37.301 | 24.7751 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0030194 | 47.2779 | 28.0802 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 22.8374 | 13.564 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0035811 | 34.4179 | 21.0412 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 32.9412 | 20.1384 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0022493 | 38.8006 | 26.5896 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 37.1626 | 25.4671 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0058683 | 48.3642 | 28.3073 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 23.5294 | 13.7716 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0074273 | 31.8261 | 19.7391 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 25.3287 | 15.7093 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0047218 | 36.3027 | 22.2222 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 26.2284 | 16.0554 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0032395 | 31.862 | 17.8973 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 27.474 | 15.4325 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0071390 | 45.1572 | 27.7987 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 24.8443 | 15.2941 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0081481 | 36.2445 | 23.7555 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 28.7197 | 18.8235 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0094538 | 37.6942 | 25.184 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 31.9031 | 21.3149 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0060736 | 51.7 | 33.9 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 35.7785 | 23.4602 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0090126 | 31.8404 | 19.2182 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 27.0588 | 16.3322 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0078005 | 40.9471 | 22.8412 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 20.346 | 11.3495 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0031255 | 43.2606 | 24.0051 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 23.3218 | 12.9412 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0027021 | 22.9981 | 12.3836 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 17.0934 | 9.20415 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 99.9308 | 99.9308 | mus_caroli | MGP_CAROLIEiJ_P0046663 | 99.9308 | 99.9308 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0049617 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0049599 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0049559 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0049293 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0049399 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0050044 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0049293 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 99.654 | 99.5156 | mus_pahari | MGP_PahariEiJ_P0039252 | 99.723 | 99.5845 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus | ENSMUSP00000048340 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0049222 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0050158 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 98.8927 | 98.6851 | rattus_norvegicus | ENSRNOP00000078225 | 99.6513 | 99.4421 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0049443 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0048586 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 99.7924 | 99.7232 | mus_spicilegus | ENSMSIP00000028837 | 99.9307 | 99.8614 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0049293 | 97.8334 | 97.8334 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0049559 | 100 | 100 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 99.654 | 99.654 | mus_spretus | MGP_SPRETEiJ_P0048591 | 99.8613 | 99.8613 |
MGP_DBA2J_G0024235 | mus_musculus_dba2j | MGP_DBA2J_P0049318 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0048996 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |