RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_DBA2J_G0023267	Gene ID		Accession	-
Symbol	Rpl10a	Alias	-	Full Name	ribosomal protein L10A
Status	Confidence	Length	2559 bases	Strand	Plus strand
Position	17 : 26364116 - 26366674	RNA binding domain	Ribosomal_L1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_DBA2J_P0046248	Ribosomal_L1	PF00687	1.2e-44	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Rpl10a-001	MGP_DBA2J_T0046248	829	217aa	MGP_DBA2J_P0046248"/note="transcript_id=MGP_DBA2J_T0046248
-	MGP_DBA2J_T0046249	783	No protein	-
-	MGP_DBA2J_T0046250	949	58aa	MGP_DBA2J_P0046250"/note="transcript_id=MGP_DBA2J_T0046250
-	MGP_DBA2J_T0046251	379	No protein	-
-	MGP_DBA2J_T0046252	702	No protein	-
-	MGP_DBA2J_T0046253	804	No protein	-
-	MGP_DBA2J_T0046254	1615	No protein	-

Gene Model

Click here to download MGP_DBA2J_G0023267's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_DBA2J_G0023267's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0042945	9.95575	4.86726	mus_musculus_dba2j	MGP_DBA2J_P0046248	20.7373	10.1382
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0081824	27.4436	12.782	mus_musculus_dba2j	MGP_DBA2J_P0046248	33.6406	15.6682
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0058237	28	12.4444	mus_musculus_dba2j	MGP_DBA2J_P0046248	29.0323	12.9032
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0092721	23.6607	10.2679	mus_musculus_dba2j	MGP_DBA2J_P0046248	24.424	10.5991
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0053168	26.2411	12.0567	mus_musculus_dba2j	MGP_DBA2J_P0046248	34.1014	15.6682
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0028756	24.8366	11.1111	mus_musculus_dba2j	MGP_DBA2J_P0046248	17.5115	7.8341

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_caroli	MGP_CAROLIEiJ_P0043628	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0046529	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_aj	MGP_AJ_P0046504	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0046465	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	99.5392	99.5392	mus_musculus_c3hhej	MGP_C3HHeJ_P0046198	95.5752	95.5752
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	56.2212	54.8387	mus_musculus_casteij	MGP_CASTEiJ_P0046295	99.187	96.748
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0046950	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	25.3456	25.3456	mus_musculus_fvbnj	MGP_FVBNJ_P0046222	94.8276	94.8276
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_pahari	MGP_PahariEiJ_P0055927	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus	ENSMUSP00000048469	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	98.1567	98.1567	mus_musculus_cbaj	MGP_CBAJ_P0046132	98.1567	98.1567
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	87.0968	87.0968	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0047047	92.6471	92.6471
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	90.7834	89.8617	rattus_norvegicus	ENSRNOP00000077351	98.0099	97.0149
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	98.6175	97.6959	rattus_norvegicus	ENSRNOP00000082732	98.6175	97.6959
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	rattus_norvegicus	ENSRNOP00000000603	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	91.2442	86.1751	rattus_norvegicus	ENSRNOP00000039797	91.2442	86.1751
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	52.9954	52.5346	rattus_norvegicus	ENSRNOP00000080756	80.9859	80.2817
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	97.6959	97.235	rattus_norvegicus	ENSRNOP00000081327	97.6959	97.235
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	98.1567	97.235	rattus_norvegicus	ENSRNOP00000089821	98.1567	97.235
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	97.6959	97.235	rattus_norvegicus	ENSRNOP00000015278	95.9276	95.4751
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	25.3456	25.3456	mus_musculus_lpj	MGP_LPJ_P0046359	94.8276	94.8276
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	25.3456	25.3456	mus_musculus_wsbeij	MGP_WSBEiJ_P0045570	94.8276	94.8276
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	99.5392	mus_spicilegus	ENSMSIP00000009462	100	99.5392
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0046194	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_musculus_akrj	MGP_AKRJ_P0046452	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	100	100	mus_spretus	MGP_SPRETEiJ_P0045538	100	100
MGP_DBA2J_G0023267	mus_musculus_dba2j	MGP_DBA2J_P0046248	98.6175	98.6175	mus_musculus_pwkphj	MGP_PWKPhJ_P0045890	98.6175	98.6175

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression