RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_DBA2J_G0020303 | Gene ID |
|
Accession |
- |
Symbol |
Snrnp48 |
Alias |
- |
Full Name |
small nuclear ribonucleoprotein 48 (U11/U12) |
Status |
Confidence |
Length |
23011 bases |
Strand |
Plus strand |
Position |
13 : 34893548 - 34916558 |
RNA binding domain |
zf-U11-48K |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_DBA2J_P0036556 |
zf-U11-48K |
PF05253 |
3.5e-10 |
1 |
MGP_DBA2J_P0036555 |
zf-U11-48K |
PF05253 |
7.7e-10 |
1 |
MGP_DBA2J_P0036554 |
zf-U11-48K |
PF05253 |
1e-09 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Snrnp48-201 |
MGP_DBA2J_T0036554 |
1789 |
337aa |
MGP_DBA2J_P0036554"/note="transcript_id=MGP_DBA2J_T0036554 |
- |
MGP_DBA2J_T0036555 |
847 |
274aa |
MGP_DBA2J_P0036555"/note="transcript_id=MGP_DBA2J_T0036555 |
- |
MGP_DBA2J_T0036556 |
435 |
144aa |
MGP_DBA2J_P0036556"/note="transcript_id=MGP_DBA2J_T0036556 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0042627 | 35.7513 | 18.6528 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 20.4748 | 10.6825 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0058769 | 41.7219 | 21.1921 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 18.6944 | 9.49555 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0042633 | 37.013 | 19.4805 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 16.9139 | 8.90208 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 98.8131 | 98.5163 | mus_caroli | MGP_CAROLIEiJ_P0034134 | 98.8131 | 98.5163 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0036796 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0036729 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0036749 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0036502 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0036428 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0037207 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0036526 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 98.2196 | 97.6261 | mus_pahari | MGP_PahariEiJ_P0040742 | 98.2196 | 97.6261 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus | ENSMUSP00000089230 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0036410 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0037258 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 92.2849 | 90.8012 | rattus_norvegicus | ENSRNOP00000085198 | 89.1117 | 87.6791 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0036690 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0035920 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_spicilegus | ENSMSIP00000002879 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0036520 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0036698 | 100 | 100 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 99.7033 | 99.1098 | mus_spretus | MGP_SPRETEiJ_P0035745 | 99.7033 | 99.1098 |
MGP_DBA2J_G0020303 | mus_musculus_dba2j | MGP_DBA2J_P0036554 | 99.7033 | 99.7033 | mus_musculus_pwkphj | MGP_PWKPhJ_P0036076 | 99.7033 | 99.7033 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |