Description

Ensembl ID MGP_DBA2J_G0020303 Gene ID Accession -
Symbol Snrnp48 Alias - Full Name small nuclear ribonucleoprotein 48 (U11/U12)
Status Confidence Length 23011 bases Strand Plus strand
Position 13 : 34893548 - 34916558 RNA binding domain zf-U11-48K
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0036556 zf-U11-48K PF05253 3.5e-10 1
MGP_DBA2J_P0036555 zf-U11-48K PF05253 7.7e-10 1
MGP_DBA2J_P0036554 zf-U11-48K PF05253 1e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Snrnp48-201 MGP_DBA2J_T0036554 1789 337aa MGP_DBA2J_P0036554"/note="transcript_id=MGP_DBA2J_T0036554
- MGP_DBA2J_T0036555 847 274aa MGP_DBA2J_P0036555"/note="transcript_id=MGP_DBA2J_T0036555
- MGP_DBA2J_T0036556 435 144aa MGP_DBA2J_P0036556"/note="transcript_id=MGP_DBA2J_T0036556

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P004262735.751318.6528mus_musculus_dba2jMGP_DBA2J_P003655420.474810.6825
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P005876941.721921.1921mus_musculus_dba2jMGP_DBA2J_P003655418.69449.49555
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P004263337.01319.4805mus_musculus_dba2jMGP_DBA2J_P003655416.91398.90208

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P003655498.813198.5163mus_caroliMGP_CAROLIEiJ_P003413498.813198.5163
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0036796100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_ajMGP_AJ_P0036729100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_balbcjMGP_BALBcJ_P0036749100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_c3hhejMGP_C3HHeJ_P0036502100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_casteijMGP_CASTEiJ_P0036428100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0037207100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_fvbnjMGP_FVBNJ_P0036526100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P003655498.219697.6261mus_pahariMGP_PahariEiJ_P004074298.219697.6261
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculusENSMUSP00000089230100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_cbajMGP_CBAJ_P0036410100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0037258100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P003655492.284990.8012rattus_norvegicusENSRNOP0000008519889.111787.6791
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_lpjMGP_LPJ_P0036690100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_wsbeijMGP_WSBEiJ_P0035920100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_spicilegusENSMSIP00000002879100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0036520100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P0036554100100mus_musculus_akrjMGP_AKRJ_P0036698100100
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P003655499.703399.1098mus_spretusMGP_SPRETEiJ_P003574599.703399.1098
MGP_DBA2J_G0020303mus_musculus_dba2jMGP_DBA2J_P003655499.703399.7033mus_musculus_pwkphjMGP_PWKPhJ_P003607699.703399.7033

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression