RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_DBA2J_G0019778 | Gene ID |
|
Accession |
- |
Symbol |
Fcf1 |
Alias |
- |
Full Name |
FCF1 rRNA processing protein |
Status |
Confidence |
Length |
12536 bases |
Strand |
Plus strand |
Position |
12 : 81989849 - 82002384 |
RNA binding domain |
Fcf1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_DBA2J_P0035200 |
Fcf1 |
PF04900 |
9.5e-38 |
1 |
MGP_DBA2J_P0035199 |
Fcf1 |
PF04900 |
1e-37 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Fcf1-001 |
MGP_DBA2J_T0035199 |
749 |
198aa |
MGP_DBA2J_P0035199"/note="transcript_id=MGP_DBA2J_T0035199 |
- |
MGP_DBA2J_T0035200 |
731 |
186aa |
MGP_DBA2J_P0035200"/note="transcript_id=MGP_DBA2J_T0035200 |
- |
MGP_DBA2J_T0035201 |
617 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0040689 | 33.3333 | 17.6707 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 41.9192 | 22.2222 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 98.9899 | mus_caroli | MGP_CAROLIEiJ_P0032864 | 100 | 98.9899 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0035445 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0035368 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0035365 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0035143 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_casteij | MGP_CASTEiJ_P0035073 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0035862 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0035183 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 99.4949 | 98.4848 | mus_pahari | MGP_PahariEiJ_P0082980 | 99.4949 | 98.4848 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus | ENSMUSP00000021669 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0035061 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0035896 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 99.4949 | rattus_norvegicus | ENSRNOP00000006297 | 100 | 99.4949 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0035332 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0034587 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 80.303 | 77.7778 | mus_spicilegus | ENSMSIP00000005246 | 85.9459 | 83.2432 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0035192 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0035350 | 100 | 100 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 99.4949 | mus_spretus | MGP_SPRETEiJ_P0034376 | 100 | 99.4949 |
MGP_DBA2J_G0019778 | mus_musculus_dba2j | MGP_DBA2J_P0035199 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0034751 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |