Description

Ensembl ID MGP_DBA2J_G0019778 Gene ID Accession -
Symbol Fcf1 Alias - Full Name FCF1 rRNA processing protein
Status Confidence Length 12536 bases Strand Plus strand
Position 12 : 81989849 - 82002384 RNA binding domain Fcf1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0035200 Fcf1 PF04900 9.5e-38 1
MGP_DBA2J_P0035199 Fcf1 PF04900 1e-37 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Fcf1-001 MGP_DBA2J_T0035199 749 198aa MGP_DBA2J_P0035199"/note="transcript_id=MGP_DBA2J_T0035199
- MGP_DBA2J_T0035200 731 186aa MGP_DBA2J_P0035200"/note="transcript_id=MGP_DBA2J_T0035200
- MGP_DBA2J_T0035201 617 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P004068933.333317.6707mus_musculus_dba2jMGP_DBA2J_P003519941.919222.2222

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P003519910098.9899mus_caroliMGP_CAROLIEiJ_P003286410098.9899
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0035445100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_ajMGP_AJ_P0035368100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_balbcjMGP_BALBcJ_P0035365100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_c3hhejMGP_C3HHeJ_P0035143100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_casteijMGP_CASTEiJ_P0035073100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0035862100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_fvbnjMGP_FVBNJ_P0035183100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P003519999.494998.4848mus_pahariMGP_PahariEiJ_P008298099.494998.4848
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculusENSMUSP00000021669100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_cbajMGP_CBAJ_P0035061100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0035896100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P003519910099.4949rattus_norvegicusENSRNOP0000000629710099.4949
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_lpjMGP_LPJ_P0035332100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_wsbeijMGP_WSBEiJ_P0034587100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P003519980.30377.7778mus_spicilegusENSMSIP0000000524685.945983.2432
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0035192100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_akrjMGP_AKRJ_P0035350100100
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P003519910099.4949mus_spretusMGP_SPRETEiJ_P003437610099.4949
MGP_DBA2J_G0019778mus_musculus_dba2jMGP_DBA2J_P0035199100100mus_musculus_pwkphjMGP_PWKPhJ_P0034751100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression