RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_DBA2J_G0017304 | Gene ID |
|
Accession |
- |
Symbol |
Ptbp1 |
Alias |
- |
Full Name |
polypyrimidine tract binding protein 1 |
Status |
Confidence |
Length |
10352 bases |
Strand |
Plus strand |
Position |
10 : 76823821 - 76834172 |
RNA binding domain |
RRM_5 , RRM_8 , RRM_1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_DBA2J_P0025889 |
RRM_5 |
PF13893 |
3.6e-65 |
1 |
MGP_DBA2J_P0025889 |
RRM_5 |
PF13893 |
3.6e-65 |
2 |
MGP_DBA2J_P0025889 |
RRM_5 |
PF13893 |
3.6e-65 |
3 |
MGP_DBA2J_P0025889 |
RRM_5 |
PF13893 |
3.6e-65 |
4 |
MGP_DBA2J_P0025889 |
RRM_8 |
PF11835 |
9.4e-15 |
5 |
MGP_DBA2J_P0025889 |
RRM_1 |
PF00076 |
5.1e-38 |
6 |
MGP_DBA2J_P0025889 |
RRM_1 |
PF00076 |
5.1e-38 |
7 |
MGP_DBA2J_P0025889 |
RRM_1 |
PF00076 |
5.1e-38 |
8 |
MGP_DBA2J_P0025887 |
RRM_5 |
PF13893 |
4.6e-65 |
1 |
MGP_DBA2J_P0025887 |
RRM_5 |
PF13893 |
4.6e-65 |
2 |
MGP_DBA2J_P0025887 |
RRM_5 |
PF13893 |
4.6e-65 |
3 |
MGP_DBA2J_P0025887 |
RRM_5 |
PF13893 |
4.6e-65 |
4 |
MGP_DBA2J_P0025887 |
RRM_8 |
PF11835 |
1.1e-14 |
5 |
MGP_DBA2J_P0025887 |
RRM_1 |
PF00076 |
6.9e-38 |
6 |
MGP_DBA2J_P0025887 |
RRM_1 |
PF00076 |
6.9e-38 |
7 |
MGP_DBA2J_P0025887 |
RRM_1 |
PF00076 |
6.9e-38 |
8 |
MGP_DBA2J_P0025896 |
RRM_5 |
PF13893 |
1.6e-64 |
1 |
MGP_DBA2J_P0025896 |
RRM_5 |
PF13893 |
1.6e-64 |
2 |
MGP_DBA2J_P0025896 |
RRM_5 |
PF13893 |
1.6e-64 |
3 |
MGP_DBA2J_P0025896 |
RRM_8 |
PF11835 |
7.7e-15 |
4 |
MGP_DBA2J_P0025896 |
RRM_1 |
PF00076 |
2.6e-35 |
5 |
MGP_DBA2J_P0025896 |
RRM_1 |
PF00076 |
2.6e-35 |
6 |
MGP_DBA2J_P0025896 |
RRM_1 |
PF00076 |
2.6e-35 |
7 |
MGP_DBA2J_P0025892 |
RRM_5 |
PF13893 |
9.9e-16 |
1 |
MGP_DBA2J_P0025892 |
RRM_5 |
PF13893 |
9.9e-16 |
2 |
MGP_DBA2J_P0025892 |
RRM_5 |
PF13893 |
9.9e-16 |
3 |
MGP_DBA2J_P0025892 |
RRM_8 |
PF11835 |
3.5e-14 |
4 |
MGP_DBA2J_P0025892 |
RRM_1 |
PF00076 |
2.9e-17 |
5 |
MGP_DBA2J_P0025900 |
RRM_5 |
PF13893 |
1.8e-06 |
1 |
MGP_DBA2J_P0025900 |
RRM_5 |
PF13893 |
1.8e-06 |
2 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Ptbp1-001 |
MGP_DBA2J_T0025887 |
3110 |
555aa |
MGP_DBA2J_P0025887"/note="transcript_id=MGP_DBA2J_T0025887 |
- |
MGP_DBA2J_T0025888 |
950 |
No protein |
- |
- |
MGP_DBA2J_T0025889 |
3176 |
529aa |
MGP_DBA2J_P0025889"/note="transcript_id=MGP_DBA2J_T0025889 |
- |
MGP_DBA2J_T0025890 |
2369 |
No protein |
- |
- |
MGP_DBA2J_T0025891 |
657 |
No protein |
- |
- |
MGP_DBA2J_T0025892 |
1765 |
353aa |
MGP_DBA2J_P0025892"/note="transcript_id=MGP_DBA2J_T0025892 |
- |
MGP_DBA2J_T0025893 |
389 |
113aa |
MGP_DBA2J_P0025893"/note="transcript_id=MGP_DBA2J_T0025893 |
- |
MGP_DBA2J_T0025894 |
369 |
No protein |
- |
- |
MGP_DBA2J_T0025895 |
385 |
62aa |
MGP_DBA2J_P0025895"/note="transcript_id=MGP_DBA2J_T0025895 |
- |
MGP_DBA2J_T0025896 |
2598 |
489aa |
MGP_DBA2J_P0025896"/note="transcript_id=MGP_DBA2J_T0025896 |
- |
MGP_DBA2J_T0025897 |
375 |
55aa |
MGP_DBA2J_P0025897"/note="transcript_id=MGP_DBA2J_T0025897 |
- |
MGP_DBA2J_T0025898 |
319 |
106aa |
MGP_DBA2J_P0025898"/note="transcript_id=MGP_DBA2J_T0025898 |
- |
MGP_DBA2J_T0025899 |
744 |
No protein |
- |
- |
MGP_DBA2J_T0025900 |
848 |
162aa |
MGP_DBA2J_P0025900"/note="transcript_id=MGP_DBA2J_T0025900 |
- |
MGP_DBA2J_T0025902 |
693 |
No protein |
- |
- |
MGP_DBA2J_T0025903 |
2108 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0065625 | 87.9061 | 78.7004 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 87.7477 | 78.5586 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0063163 | 86.0902 | 73.8722 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 82.5225 | 70.8108 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0048361 | 40.2707 | 23.8579 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 42.8829 | 25.4054 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0082413 | 38.5993 | 21.987 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 42.7027 | 24.3243 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0051865 | 15.7631 | 9.17431 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 34.0541 | 19.8198 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0023753 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0026061 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0026030 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0025834 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0026520 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 99.6396 | 99.6396 | mus_pahari | MGP_PahariEiJ_P0086907 | 99.6396 | 99.6396 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus | ENSMUSP00000126192 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0025760 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0026569 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 81.8018 | 77.8378 | rattus_norvegicus | ENSRNOP00000080777 | 90.2584 | 85.8847 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 94.5946 | 94.2342 | rattus_norvegicus | ENSRNOP00000077281 | 93.5829 | 93.2264 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0025999 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_spicilegus | ENSMSIP00000001977 | 100 | 100 |
MGP_DBA2J_G0017304 | mus_musculus_dba2j | MGP_DBA2J_P0025887 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0026025 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |