Description

Ensembl ID MGP_DBA2J_G0017304 Gene ID Accession -
Symbol Ptbp1 Alias - Full Name polypyrimidine tract binding protein 1
Status Confidence Length 10352 bases Strand Plus strand
Position 10 : 76823821 - 76834172 RNA binding domain RRM_5 , RRM_8 , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_DBA2J_P0025889 RRM_5 PF13893 3.6e-65 1
MGP_DBA2J_P0025889 RRM_5 PF13893 3.6e-65 2
MGP_DBA2J_P0025889 RRM_5 PF13893 3.6e-65 3
MGP_DBA2J_P0025889 RRM_5 PF13893 3.6e-65 4
MGP_DBA2J_P0025889 RRM_8 PF11835 9.4e-15 5
MGP_DBA2J_P0025889 RRM_1 PF00076 5.1e-38 6
MGP_DBA2J_P0025889 RRM_1 PF00076 5.1e-38 7
MGP_DBA2J_P0025889 RRM_1 PF00076 5.1e-38 8
MGP_DBA2J_P0025887 RRM_5 PF13893 4.6e-65 1
MGP_DBA2J_P0025887 RRM_5 PF13893 4.6e-65 2
MGP_DBA2J_P0025887 RRM_5 PF13893 4.6e-65 3
MGP_DBA2J_P0025887 RRM_5 PF13893 4.6e-65 4
MGP_DBA2J_P0025887 RRM_8 PF11835 1.1e-14 5
MGP_DBA2J_P0025887 RRM_1 PF00076 6.9e-38 6
MGP_DBA2J_P0025887 RRM_1 PF00076 6.9e-38 7
MGP_DBA2J_P0025887 RRM_1 PF00076 6.9e-38 8
MGP_DBA2J_P0025896 RRM_5 PF13893 1.6e-64 1
MGP_DBA2J_P0025896 RRM_5 PF13893 1.6e-64 2
MGP_DBA2J_P0025896 RRM_5 PF13893 1.6e-64 3
MGP_DBA2J_P0025896 RRM_8 PF11835 7.7e-15 4
MGP_DBA2J_P0025896 RRM_1 PF00076 2.6e-35 5
MGP_DBA2J_P0025896 RRM_1 PF00076 2.6e-35 6
MGP_DBA2J_P0025896 RRM_1 PF00076 2.6e-35 7
MGP_DBA2J_P0025892 RRM_5 PF13893 9.9e-16 1
MGP_DBA2J_P0025892 RRM_5 PF13893 9.9e-16 2
MGP_DBA2J_P0025892 RRM_5 PF13893 9.9e-16 3
MGP_DBA2J_P0025892 RRM_8 PF11835 3.5e-14 4
MGP_DBA2J_P0025892 RRM_1 PF00076 2.9e-17 5
MGP_DBA2J_P0025900 RRM_5 PF13893 1.8e-06 1
MGP_DBA2J_P0025900 RRM_5 PF13893 1.8e-06 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptbp1-001 MGP_DBA2J_T0025887 3110 555aa MGP_DBA2J_P0025887"/note="transcript_id=MGP_DBA2J_T0025887
- MGP_DBA2J_T0025888 950 No protein -
- MGP_DBA2J_T0025889 3176 529aa MGP_DBA2J_P0025889"/note="transcript_id=MGP_DBA2J_T0025889
- MGP_DBA2J_T0025890 2369 No protein -
- MGP_DBA2J_T0025891 657 No protein -
- MGP_DBA2J_T0025892 1765 353aa MGP_DBA2J_P0025892"/note="transcript_id=MGP_DBA2J_T0025892
- MGP_DBA2J_T0025893 389 113aa MGP_DBA2J_P0025893"/note="transcript_id=MGP_DBA2J_T0025893
- MGP_DBA2J_T0025894 369 No protein -
- MGP_DBA2J_T0025895 385 62aa MGP_DBA2J_P0025895"/note="transcript_id=MGP_DBA2J_T0025895
- MGP_DBA2J_T0025896 2598 489aa MGP_DBA2J_P0025896"/note="transcript_id=MGP_DBA2J_T0025896
- MGP_DBA2J_T0025897 375 55aa MGP_DBA2J_P0025897"/note="transcript_id=MGP_DBA2J_T0025897
- MGP_DBA2J_T0025898 319 106aa MGP_DBA2J_P0025898"/note="transcript_id=MGP_DBA2J_T0025898
- MGP_DBA2J_T0025899 744 No protein -
- MGP_DBA2J_T0025900 848 162aa MGP_DBA2J_P0025900"/note="transcript_id=MGP_DBA2J_T0025900
- MGP_DBA2J_T0025902 693 No protein -
- MGP_DBA2J_T0025903 2108 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P006562587.906178.7004mus_musculus_dba2jMGP_DBA2J_P002588787.747778.5586
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P006316386.090273.8722mus_musculus_dba2jMGP_DBA2J_P002588782.522570.8108
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P004836140.270723.8579mus_musculus_dba2jMGP_DBA2J_P002588742.882925.4054
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P008241338.599321.987mus_musculus_dba2jMGP_DBA2J_P002588742.702724.3243
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P005186515.76319.17431mus_musculus_dba2jMGP_DBA2J_P002588734.054119.8198

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_caroliMGP_CAROLIEiJ_P0023753100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_ajMGP_AJ_P0026061100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_balbcjMGP_BALBcJ_P0026030100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_c3hhejMGP_C3HHeJ_P0025834100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0026520100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P002588799.639699.6396mus_pahariMGP_PahariEiJ_P008690799.639699.6396
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculusENSMUSP00000126192100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_cbajMGP_CBAJ_P0025760100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0026569100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P002588781.801877.8378rattus_norvegicusENSRNOP0000008077790.258485.8847
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P002588794.594694.2342rattus_norvegicusENSRNOP0000007728193.582993.2264
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_lpjMGP_LPJ_P0025999100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_spicilegusENSMSIP00000001977100100
MGP_DBA2J_G0017304mus_musculus_dba2jMGP_DBA2J_P0025887100100mus_musculus_akrjMGP_AKRJ_P0026025100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression