Description

Ensembl ID MGP_CBAJ_G0034792 Gene ID Accession -
Symbol Xrn1 Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 114539 bases Strand Plus strand
Position 9 : 103365281 - 103479819 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CBAJ_P0093188 SH3_12 PF18129 3.7e-19 1
MGP_CBAJ_P0093188 XRN_N PF03159 1.7e-93 2
MGP_CBAJ_P0093188 XRN1_D1 PF18332 7.5e-33 3
MGP_CBAJ_P0093187 SH3_12 PF18129 3.7e-19 1
MGP_CBAJ_P0093187 XRN_N PF03159 1.7e-93 2
MGP_CBAJ_P0093187 XRN1_D1 PF18332 7.3e-33 3
MGP_CBAJ_P0093192 XRN_N PF03159 3.4e-94 1
MGP_CBAJ_P0093192 XRN1_D1 PF18332 9.8e-07 2
MGP_CBAJ_P0093189 XRN_N PF03159 8.3e-13 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Xrn1-001 MGP_CBAJ_T0093187 5499 1723aa MGP_CBAJ_P0093187"/note="transcript_id=MGP_CBAJ_T0093187
- MGP_CBAJ_T0093188 10256 1719aa MGP_CBAJ_P0093188"/note="transcript_id=MGP_CBAJ_T0093188
- MGP_CBAJ_T0093189 357 40aa MGP_CBAJ_P0093189"/note="transcript_id=MGP_CBAJ_T0093189
- MGP_CBAJ_T0093190 3357 No protein -
- MGP_CBAJ_T0093191 6235 No protein -
- MGP_CBAJ_T0093192 3093 969aa MGP_CBAJ_P0093192"/note="transcript_id=MGP_CBAJ_T0093192
- MGP_CBAJ_T0093193 3615 No protein -
- MGP_CBAJ_T0093194 844 No protein -
- MGP_CBAJ_T0093195 3046 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P005775349.63234.7003mus_musculus_cbajMGP_CBAJ_P009318727.394119.1526

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318794.254293.4997mus_caroliMGP_CAROLIEiJ_P008911398.723497.9331
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0093677100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_ajMGP_AJ_P0093764100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_lpjMGP_LPJ_P0093407100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculusENSMUSP00000034981100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318797.388394.2542rattus_norvegicusENSRNOP0000001448197.388394.2542
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.767899.5937mus_musculus_pwkphjMGP_PWKPhJ_P009330199.767899.5937
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.303599.3035mus_musculus_balbcjMGP_BALBcJ_P0093692100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318798.665196.8659mus_pahariMGP_PahariEiJ_P002477798.952397.1479
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_fvbnjMGP_FVBNJ_P0093256100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_dba2jMGP_DBA2J_P0093395100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0093231100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.477799.3616mus_spretusMGP_SPRETEiJ_P009280999.477799.3616
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.477799.1875mus_spicilegusENSMSIP0000001899599.709199.4183
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.767899.5937mus_musculus_nzohlltjMGP_NZOHlLtJ_P009453399.767899.5937
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P009318799.94299.7678mus_musculus_casteijMGP_CASTEiJ_P009386299.94299.7678
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_akrjMGP_AKRJ_P0093717100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_c3hhejMGP_C3HHeJ_P0093268100100
MGP_CBAJ_G0034792mus_musculus_cbajMGP_CBAJ_P0093187100100mus_musculus_wsbeijMGP_WSBEiJ_P0092265100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression