Description

Ensembl ID MGP_CASTEiJ_G0034736 Gene ID Accession -
Symbol Fmr1 Alias - Full Name fragile X mental retardation syndrome 1
Status Confidence Length 42316 bases Strand Plus strand
Position X : 50246668 - 50288983 RNA binding domain Agenet , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0096409 Agenet PF05641 1.1e-10 1
MGP_CASTEiJ_P0096409 KH_1 PF00013 1.6e-15 2
MGP_CASTEiJ_P0096409 KH_1 PF00013 1.6e-15 3
MGP_CASTEiJ_P0096409 KH_9 PF17904 1.3e-37 4
MGP_CASTEiJ_P0096409 FXMRP1_C_core PF12235 3.5e-24 5
MGP_CASTEiJ_P0096411 Agenet PF05641 1.1e-10 1
MGP_CASTEiJ_P0096411 KH_1 PF00013 9.6e-16 2
MGP_CASTEiJ_P0096411 KH_1 PF00013 9.6e-16 3
MGP_CASTEiJ_P0096411 KH_9 PF17904 1.3e-37 4
MGP_CASTEiJ_P0096411 FXMRP1_C_core PF12235 3.5e-24 5
MGP_CASTEiJ_P0096410 Agenet PF05641 1.1e-10 1
MGP_CASTEiJ_P0096410 KH_1 PF00013 1.7e-15 2
MGP_CASTEiJ_P0096410 KH_1 PF00013 1.7e-15 3
MGP_CASTEiJ_P0096410 KH_9 PF17904 1.3e-37 4
MGP_CASTEiJ_P0096410 FXMRP1_C_core PF12235 2.2e-46 5
MGP_CASTEiJ_P0096407 Agenet PF05641 1.1e-10 1
MGP_CASTEiJ_P0096407 KH_1 PF00013 4.3e-11 2
MGP_CASTEiJ_P0096407 KH_9 PF17904 1.2e-37 3
MGP_CASTEiJ_P0096407 FXMRP1_C_core PF12235 2.2e-46 4
MGP_CASTEiJ_P0096403 Agenet PF05641 1.3e-10 1
MGP_CASTEiJ_P0096403 KH_1 PF00013 1.1e-15 2
MGP_CASTEiJ_P0096403 KH_1 PF00013 1.1e-15 3
MGP_CASTEiJ_P0096403 KH_9 PF17904 1.4e-37 4
MGP_CASTEiJ_P0096403 FXMRP1_C_core PF12235 3.6e-46 5
MGP_CASTEiJ_P0096408 Agenet PF05641 1.3e-10 1
MGP_CASTEiJ_P0096408 KH_1 PF00013 1.2e-15 2
MGP_CASTEiJ_P0096408 KH_1 PF00013 1.2e-15 3
MGP_CASTEiJ_P0096408 KH_9 PF17904 1.5e-37 4
MGP_CASTEiJ_P0096408 FXMRP1_C_core PF12235 6.9e-46 5

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Fmr1-001 MGP_CASTEiJ_T0096403 4402 614aa MGP_CASTEiJ_P0096403"/note="transcript_id=MGP_CASTEiJ_T0096403
- MGP_CASTEiJ_T0096404 1885 No protein -
- MGP_CASTEiJ_T0096405 2890 No protein -
- MGP_CASTEiJ_T0096406 719 No protein -
- MGP_CASTEiJ_T0096407 4250 591aa MGP_CASTEiJ_P0096407"/note="transcript_id=MGP_CASTEiJ_T0096407
- MGP_CASTEiJ_T0096408 4192 631aa MGP_CASTEiJ_P0096408"/note="transcript_id=MGP_CASTEiJ_T0096408
- MGP_CASTEiJ_T0096409 4054 585aa MGP_CASTEiJ_P0096409"/note="transcript_id=MGP_CASTEiJ_T0096409
- MGP_CASTEiJ_T0096410 4069 593aa MGP_CASTEiJ_P0096410"/note="transcript_id=MGP_CASTEiJ_T0096410
- MGP_CASTEiJ_T0096411 4051 589aa MGP_CASTEiJ_P0096411"/note="transcript_id=MGP_CASTEiJ_T0096411
- MGP_CASTEiJ_T0096412 1951 No protein -
- MGP_CASTEiJ_T0096413 588 No protein -
- MGP_CASTEiJ_T0096414 646 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0034736

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0034736

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression