RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0034736 | Gene ID |
|
Accession |
- |
Symbol |
Fmr1 |
Alias |
- |
Full Name |
fragile X mental retardation syndrome 1 |
Status |
Confidence |
Length |
42316 bases |
Strand |
Plus strand |
Position |
X : 50246668 - 50288983 |
RNA binding domain |
Agenet , KH_1 , KH_9 , FXMRP1_C_core |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0096409 |
Agenet |
PF05641 |
1.1e-10 |
1 |
MGP_CASTEiJ_P0096409 |
KH_1 |
PF00013 |
1.6e-15 |
2 |
MGP_CASTEiJ_P0096409 |
KH_1 |
PF00013 |
1.6e-15 |
3 |
MGP_CASTEiJ_P0096409 |
KH_9 |
PF17904 |
1.3e-37 |
4 |
MGP_CASTEiJ_P0096409 |
FXMRP1_C_core |
PF12235 |
3.5e-24 |
5 |
MGP_CASTEiJ_P0096411 |
Agenet |
PF05641 |
1.1e-10 |
1 |
MGP_CASTEiJ_P0096411 |
KH_1 |
PF00013 |
9.6e-16 |
2 |
MGP_CASTEiJ_P0096411 |
KH_1 |
PF00013 |
9.6e-16 |
3 |
MGP_CASTEiJ_P0096411 |
KH_9 |
PF17904 |
1.3e-37 |
4 |
MGP_CASTEiJ_P0096411 |
FXMRP1_C_core |
PF12235 |
3.5e-24 |
5 |
MGP_CASTEiJ_P0096410 |
Agenet |
PF05641 |
1.1e-10 |
1 |
MGP_CASTEiJ_P0096410 |
KH_1 |
PF00013 |
1.7e-15 |
2 |
MGP_CASTEiJ_P0096410 |
KH_1 |
PF00013 |
1.7e-15 |
3 |
MGP_CASTEiJ_P0096410 |
KH_9 |
PF17904 |
1.3e-37 |
4 |
MGP_CASTEiJ_P0096410 |
FXMRP1_C_core |
PF12235 |
2.2e-46 |
5 |
MGP_CASTEiJ_P0096407 |
Agenet |
PF05641 |
1.1e-10 |
1 |
MGP_CASTEiJ_P0096407 |
KH_1 |
PF00013 |
4.3e-11 |
2 |
MGP_CASTEiJ_P0096407 |
KH_9 |
PF17904 |
1.2e-37 |
3 |
MGP_CASTEiJ_P0096407 |
FXMRP1_C_core |
PF12235 |
2.2e-46 |
4 |
MGP_CASTEiJ_P0096403 |
Agenet |
PF05641 |
1.3e-10 |
1 |
MGP_CASTEiJ_P0096403 |
KH_1 |
PF00013 |
1.1e-15 |
2 |
MGP_CASTEiJ_P0096403 |
KH_1 |
PF00013 |
1.1e-15 |
3 |
MGP_CASTEiJ_P0096403 |
KH_9 |
PF17904 |
1.4e-37 |
4 |
MGP_CASTEiJ_P0096403 |
FXMRP1_C_core |
PF12235 |
3.6e-46 |
5 |
MGP_CASTEiJ_P0096408 |
Agenet |
PF05641 |
1.3e-10 |
1 |
MGP_CASTEiJ_P0096408 |
KH_1 |
PF00013 |
1.2e-15 |
2 |
MGP_CASTEiJ_P0096408 |
KH_1 |
PF00013 |
1.2e-15 |
3 |
MGP_CASTEiJ_P0096408 |
KH_9 |
PF17904 |
1.5e-37 |
4 |
MGP_CASTEiJ_P0096408 |
FXMRP1_C_core |
PF12235 |
6.9e-46 |
5 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Fmr1-001 |
MGP_CASTEiJ_T0096403 |
4402 |
614aa |
MGP_CASTEiJ_P0096403"/note="transcript_id=MGP_CASTEiJ_T0096403 |
- |
MGP_CASTEiJ_T0096404 |
1885 |
No protein |
- |
- |
MGP_CASTEiJ_T0096405 |
2890 |
No protein |
- |
- |
MGP_CASTEiJ_T0096406 |
719 |
No protein |
- |
- |
MGP_CASTEiJ_T0096407 |
4250 |
591aa |
MGP_CASTEiJ_P0096407"/note="transcript_id=MGP_CASTEiJ_T0096407 |
- |
MGP_CASTEiJ_T0096408 |
4192 |
631aa |
MGP_CASTEiJ_P0096408"/note="transcript_id=MGP_CASTEiJ_T0096408 |
- |
MGP_CASTEiJ_T0096409 |
4054 |
585aa |
MGP_CASTEiJ_P0096409"/note="transcript_id=MGP_CASTEiJ_T0096409 |
- |
MGP_CASTEiJ_T0096410 |
4069 |
593aa |
MGP_CASTEiJ_P0096410"/note="transcript_id=MGP_CASTEiJ_T0096410 |
- |
MGP_CASTEiJ_T0096411 |
4051 |
589aa |
MGP_CASTEiJ_P0096411"/note="transcript_id=MGP_CASTEiJ_T0096411 |
- |
MGP_CASTEiJ_T0096412 |
1951 |
No protein |
- |
- |
MGP_CASTEiJ_T0096413 |
588 |
No protein |
- |
- |
MGP_CASTEiJ_T0096414 |
646 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0034736 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0034736 | | | | | | | | |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |