RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0032891 | Gene ID |
|
Accession |
- |
Symbol |
Farsa |
Alias |
- |
Full Name |
phenylalanyl-tRNA synthetase, alpha subunit |
Status |
Confidence |
Length |
13904 bases |
Strand |
Plus strand |
Position |
8 : 84888595 - 84902498 |
RNA binding domain |
PheRS_DBD1 , PheRS_DBD3 , tRNA-synt_2d |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0089871 |
PheRS_DBD1 |
PF18552 |
6.6e-23 |
1 |
MGP_CASTEiJ_P0089867 |
PheRS_DBD1 |
PF18552 |
6.2e-22 |
1 |
MGP_CASTEiJ_P0089867 |
PheRS_DBD3 |
PF18553 |
1.1e-19 |
2 |
MGP_CASTEiJ_P0089867 |
tRNA-synt_2d |
PF01409 |
3.6e-91 |
3 |
MGP_CASTEiJ_P0089870 |
PheRS_DBD1 |
PF18552 |
6.2e-22 |
1 |
MGP_CASTEiJ_P0089870 |
PheRS_DBD3 |
PF18553 |
1.1e-19 |
2 |
MGP_CASTEiJ_P0089870 |
tRNA-synt_2d |
PF01409 |
2.1e-91 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Farsa-001 |
MGP_CASTEiJ_T0089867 |
1827 |
508aa |
MGP_CASTEiJ_P0089867"/note="transcript_id=MGP_CASTEiJ_T0089867 |
- |
MGP_CASTEiJ_T0089868 |
1921 |
No protein |
- |
- |
MGP_CASTEiJ_T0089869 |
3314 |
No protein |
- |
- |
MGP_CASTEiJ_T0089870 |
1796 |
507aa |
MGP_CASTEiJ_P0089870"/note="transcript_id=MGP_CASTEiJ_T0089870 |
- |
MGP_CASTEiJ_T0089871 |
1709 |
105aa |
MGP_CASTEiJ_P0089871"/note="transcript_id=MGP_CASTEiJ_T0089871 |
- |
MGP_CASTEiJ_T0089872 |
730 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0036398 | 31.929 | 19.2905 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 28.3465 | 17.126 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0092480 | 24.1158 | 13.1833 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 29.5276 | 16.1417 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0089732 | 100 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.8031 | 99.2126 | mus_caroli | MGP_CAROLIEiJ_P0085304 | 99.8031 | 99.2126 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_aj | MGP_AJ_P0089814 | 100 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_balbcj | MGP_BALBcJ_P0089749 | 100 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0089456 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.8031 | 99.8031 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0090271 | 99.8031 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0089302 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0089318 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_lpj | MGP_LPJ_P0089491 | 100 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0089323 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0089251 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.8031 | 99.8031 | mus_musculus | ENSMUSP00000003906 | 99.8031 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.8031 | 99.8031 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0090574 | 99.8031 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0089292 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.2126 | 98.622 | mus_pahari | MGP_PahariEiJ_P0053571 | 99.2126 | 98.622 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_akrj | MGP_AKRJ_P0089753 | 100 | 99.8031 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0088805 | 100 | 100 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 92.3228 | 91.7323 | rattus_norvegicus | ENSRNOP00000076655 | 88.3239 | 87.7589 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 99.8031 | 99.6063 | mus_spicilegus | ENSMSIP00000016359 | 99.8031 | 99.6063 |
MGP_CASTEiJ_G0032891 | mus_musculus_casteij | MGP_CASTEiJ_P0089867 | 100 | 99.8031 | mus_musculus_wsbeij | MGP_WSBEiJ_P0088364 | 100 | 99.8031 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |