RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_CASTEiJ_G0032010	Gene ID		Accession	-
Symbol	Atxn2l	Alias	-	Full Name	ataxin 2-like
Status	Confidence	Length	11733 bases	Strand	Minus strand
Position	7 : 122247116 - 122258848	RNA binding domain	LsmAD , PAM2 , SM-ATX
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0086599	LsmAD	PF06741	6.6e-17	1
MGP_CASTEiJ_P0086599	PAM2	PF07145	2.8e-05	2
MGP_CASTEiJ_P0086599	SM-ATX	PF14438	1.6e-18	3
MGP_CASTEiJ_P0086600	LsmAD	PF06741	6.1e-17	1
MGP_CASTEiJ_P0086600	PAM2	PF07145	2.6e-05	2
MGP_CASTEiJ_P0086600	SM-ATX	PF14438	1.5e-18	3
MGP_CASTEiJ_P0086601	LsmAD	PF06741	7.1e-17	1
MGP_CASTEiJ_P0086601	PAM2	PF07145	2.9e-05	2
MGP_CASTEiJ_P0086601	SM-ATX	PF14438	1.7e-18	3
MGP_CASTEiJ_P0086603	LsmAD	PF06741	4.8e-17	1
MGP_CASTEiJ_P0086603	PAM2	PF07145	2.2e-05	2
MGP_CASTEiJ_P0086603	SM-ATX	PF14438	5.5e-17	3
MGP_CASTEiJ_P0086604	SM-ATX	PF14438	1.6e-19	1

Showing 1 to 13 of 13 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	MGP_CASTEiJ_T0086600	4022	994aa	MGP_CASTEiJ_P0086600"/note="transcript_id=MGP_CASTEiJ_T0086600
-	MGP_CASTEiJ_T0086601	3893	1096aa	MGP_CASTEiJ_P0086601"/note="transcript_id=MGP_CASTEiJ_T0086601
-	MGP_CASTEiJ_T0086602	503	144aa	MGP_CASTEiJ_P0086602"/note="transcript_id=MGP_CASTEiJ_T0086602
-	MGP_CASTEiJ_T0086603	2745	863aa	MGP_CASTEiJ_P0086603"/note="transcript_id=MGP_CASTEiJ_T0086603
-	MGP_CASTEiJ_T0086604	682	218aa	MGP_CASTEiJ_P0086604"/note="transcript_id=MGP_CASTEiJ_T0086604
Atxn2l-001	MGP_CASTEiJ_T0086599	3852	1049aa	MGP_CASTEiJ_P0086599"/note="transcript_id=MGP_CASTEiJ_T0086599

Showing 1 to 6 of 6 entries

Gene Model

Click here to download MGP_CASTEiJ_G0032010's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0032010's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0074226	49.7198	36.5092	mus_musculus_casteij	MGP_CASTEiJ_P0086601	56.6606	41.6058

Showing 1 to 1 of 1 entries

Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0086477	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.5438	99.2701	mus_caroli	MGP_CAROLIEiJ_P0082144	99.6347	99.3607
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_aj	MGP_AJ_P0086560	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_balbcj	MGP_BALBcJ_P0086522	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_dba2j	MGP_DBA2J_P0086221	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0087017	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_fvbnj	MGP_FVBNJ_P0086061	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_c3hhej	MGP_C3HHeJ_P0086082	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_lpj	MGP_LPJ_P0086255	99.9088	99.8175
MGP_CASTEiJ_G0032010	mus_musculus_casteij	MGP_CASTEiJ_P0086601	99.9088	99.8175	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0086101	99.9088	99.8175

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs