RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0031116 | Gene ID |
|
Accession |
- |
Symbol |
Lsm14a |
Alias |
- |
Full Name |
LSM14A mRNA processing body assembly factor |
Status |
Confidence |
Length |
51454 bases |
Strand |
Minus strand |
Position |
7 : 25566281 - 25617734 |
RNA binding domain |
LSM14 , SM-ATX , FDF |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0083365 |
LSM14 |
PF12701 |
2.2e-32 |
1 |
MGP_CASTEiJ_P0083365 |
SM-ATX |
PF14438 |
2.3e-08 |
2 |
MGP_CASTEiJ_P0083365 |
FDF |
PF09532 |
2.4e-12 |
3 |
MGP_CASTEiJ_P0083360 |
LSM14 |
PF12701 |
6e-32 |
1 |
MGP_CASTEiJ_P0083360 |
SM-ATX |
PF14438 |
5.3e-08 |
2 |
MGP_CASTEiJ_P0083360 |
FDF |
PF09532 |
4.4e-31 |
3 |
MGP_CASTEiJ_P0083366 |
LSM14 |
PF12701 |
7.4e-14 |
1 |
MGP_CASTEiJ_P0083361 |
FDF |
PF09532 |
4.2e-13 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Lsm14a-001 |
MGP_CASTEiJ_T0083360 |
2950 |
462aa |
MGP_CASTEiJ_P0083360"/note="transcript_id=MGP_CASTEiJ_T0083360 |
- |
MGP_CASTEiJ_T0083361 |
1652 |
123aa |
MGP_CASTEiJ_P0083361"/note="transcript_id=MGP_CASTEiJ_T0083361 |
- |
MGP_CASTEiJ_T0083362 |
1598 |
72aa |
MGP_CASTEiJ_P0083362"/note="transcript_id=MGP_CASTEiJ_T0083362 |
- |
MGP_CASTEiJ_T0083363 |
647 |
157aa |
MGP_CASTEiJ_P0083363"/note="transcript_id=MGP_CASTEiJ_T0083363 |
- |
MGP_CASTEiJ_T0083364 |
889 |
No protein |
- |
- |
MGP_CASTEiJ_T0083365 |
864 |
287aa |
MGP_CASTEiJ_P0083365"/note="transcript_id=MGP_CASTEiJ_T0083365 |
- |
MGP_CASTEiJ_T0083366 |
821 |
175aa |
MGP_CASTEiJ_P0083366"/note="transcript_id=MGP_CASTEiJ_T0083366 |
- |
MGP_CASTEiJ_T0083367 |
2571 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 66.7453 | 55.1887 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 61.2554 | 50.6493 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0083230 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_caroli | MGP_CAROLIEiJ_P0078960 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0083292 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0083259 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 98.2684 | 98.2684 | mus_musculus_dba2j | MGP_DBA2J_P0082968 | 98.2684 | 98.2684 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 92.2078 | 91.7749 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0083741 | 98.6111 | 98.1481 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0082843 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0082840 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0082981 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0082867 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0082788 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus | ENSMUSP00000082723 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0084009 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0082790 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 24.4589 | 24.4589 | mus_pahari | MGP_PahariEiJ_P0015834 | 91.8699 | 91.8699 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0083233 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0082288 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 99.3506 | 98.9177 | rattus_norvegicus | ENSRNOP00000069131 | 96.2264 | 95.8071 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_spicilegus | ENSMSIP00000019691 | 100 | 100 |
MGP_CASTEiJ_G0031116 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0081899 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |