Description

Ensembl ID MGP_CASTEiJ_G0031116 Gene ID Accession -
Symbol Lsm14a Alias - Full Name LSM14A mRNA processing body assembly factor
Status Confidence Length 51454 bases Strand Minus strand
Position 7 : 25566281 - 25617734 RNA binding domain LSM14 , SM-ATX , FDF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0083365 LSM14 PF12701 2.2e-32 1
MGP_CASTEiJ_P0083365 SM-ATX PF14438 2.3e-08 2
MGP_CASTEiJ_P0083365 FDF PF09532 2.4e-12 3
MGP_CASTEiJ_P0083360 LSM14 PF12701 6e-32 1
MGP_CASTEiJ_P0083360 SM-ATX PF14438 5.3e-08 2
MGP_CASTEiJ_P0083360 FDF PF09532 4.4e-31 3
MGP_CASTEiJ_P0083366 LSM14 PF12701 7.4e-14 1
MGP_CASTEiJ_P0083361 FDF PF09532 4.2e-13 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Lsm14a-001 MGP_CASTEiJ_T0083360 2950 462aa MGP_CASTEiJ_P0083360"/note="transcript_id=MGP_CASTEiJ_T0083360
- MGP_CASTEiJ_T0083361 1652 123aa MGP_CASTEiJ_P0083361"/note="transcript_id=MGP_CASTEiJ_T0083361
- MGP_CASTEiJ_T0083362 1598 72aa MGP_CASTEiJ_P0083362"/note="transcript_id=MGP_CASTEiJ_T0083362
- MGP_CASTEiJ_T0083363 647 157aa MGP_CASTEiJ_P0083363"/note="transcript_id=MGP_CASTEiJ_T0083363
- MGP_CASTEiJ_T0083364 889 No protein -
- MGP_CASTEiJ_T0083365 864 287aa MGP_CASTEiJ_P0083365"/note="transcript_id=MGP_CASTEiJ_T0083365
- MGP_CASTEiJ_T0083366 821 175aa MGP_CASTEiJ_P0083366"/note="transcript_id=MGP_CASTEiJ_T0083366
- MGP_CASTEiJ_T0083367 2571 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P005960366.745355.1887mus_musculus_casteijMGP_CASTEiJ_P008336061.255450.6493

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0083230100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_caroliMGP_CAROLIEiJ_P0078960100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_ajMGP_AJ_P0083292100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_balbcjMGP_BALBcJ_P0083259100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P008336098.268498.2684mus_musculus_dba2jMGP_DBA2J_P008296898.268498.2684
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P008336092.207891.7749mus_musculus_c57bl6njMGP_C57BL6NJ_P008374198.611198.1481
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_fvbnjMGP_FVBNJ_P0082843100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_c3hhejMGP_C3HHeJ_P0082840100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_lpjMGP_LPJ_P0082981100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0082867100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_cbajMGP_CBAJ_P0082788100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculusENSMUSP00000082723100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0084009100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_pwkphjMGP_PWKPhJ_P0082790100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P008336024.458924.4589mus_pahariMGP_PahariEiJ_P001583491.869991.8699
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_akrjMGP_AKRJ_P0083233100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_spretusMGP_SPRETEiJ_P0082288100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P008336099.350698.9177rattus_norvegicusENSRNOP0000006913196.226495.8071
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_spicilegusENSMSIP00000019691100100
MGP_CASTEiJ_G0031116mus_musculus_casteijMGP_CASTEiJ_P0083360100100mus_musculus_wsbeijMGP_WSBEiJ_P0081899100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression