RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0030918 | Gene ID |
|
Accession |
- |
Symbol |
Exosc5 |
Alias |
- |
Full Name |
exosome component 5 |
Status |
Confidence |
Length |
12312 bases |
Strand |
Plus strand |
Position |
7 : 17960914 - 17973225 |
RNA binding domain |
RNase_PH , RNase_PH_C |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0082501 |
RNase_PH |
PF01138 |
3.7e-22 |
1 |
MGP_CASTEiJ_P0082501 |
RNase_PH_C |
PF03725 |
2.1e-07 |
2 |
MGP_CASTEiJ_P0082502 |
RNase_PH |
PF01138 |
3.7e-22 |
1 |
MGP_CASTEiJ_P0082502 |
RNase_PH_C |
PF03725 |
2.1e-07 |
2 |
MGP_CASTEiJ_P0082504 |
RNase_PH |
PF01138 |
5.6e-08 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Exosc5-001 |
MGP_CASTEiJ_T0082501 |
1020 |
235aa |
MGP_CASTEiJ_P0082501"/note="transcript_id=MGP_CASTEiJ_T0082501 |
- |
MGP_CASTEiJ_T0082502 |
1680 |
235aa |
MGP_CASTEiJ_P0082502"/note="transcript_id=MGP_CASTEiJ_T0082502 |
- |
MGP_CASTEiJ_T0082503 |
5056 |
No protein |
- |
- |
MGP_CASTEiJ_T0082504 |
682 |
128aa |
MGP_CASTEiJ_P0082504"/note="transcript_id=MGP_CASTEiJ_T0082504 |
- |
MGP_CASTEiJ_T0082505 |
591 |
84aa |
MGP_CASTEiJ_P0082505"/note="transcript_id=MGP_CASTEiJ_T0082505 |
- |
MGP_CASTEiJ_T0082506 |
725 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0041142 | 45.7143 | 29.7959 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 47.6596 | 31.0638 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0082351 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 99.1489 | mus_caroli | MGP_CAROLIEiJ_P0078097 | 100 | 99.1489 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0082423 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0082377 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0082086 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0082843 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0081959 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0081974 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0082104 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0081982 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0081922 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus | ENSMUSP00000145948 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0083126 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 99.5745 | mus_musculus_pwkphj | MGP_PWKPhJ_P0081931 | 100 | 99.5745 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 99.1489 | 98.7234 | mus_pahari | MGP_PahariEiJ_P0046429 | 99.1489 | 98.7234 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0082355 | 100 | 100 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 99.5745 | mus_spretus | MGP_SPRETEiJ_P0081410 | 100 | 99.5745 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 85.5319 | 82.1277 | rattus_norvegicus | ENSRNOP00000089044 | 74.4444 | 71.4815 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 99.5745 | mus_spicilegus | ENSMSIP00000029999 | 87.6866 | 87.3134 |
MGP_CASTEiJ_G0030918 | mus_musculus_casteij | MGP_CASTEiJ_P0082502 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0081026 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |