Description

Ensembl ID MGP_CASTEiJ_G0030918 Gene ID Accession -
Symbol Exosc5 Alias - Full Name exosome component 5
Status Confidence Length 12312 bases Strand Plus strand
Position 7 : 17960914 - 17973225 RNA binding domain RNase_PH , RNase_PH_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0082501 RNase_PH PF01138 3.7e-22 1
MGP_CASTEiJ_P0082501 RNase_PH_C PF03725 2.1e-07 2
MGP_CASTEiJ_P0082502 RNase_PH PF01138 3.7e-22 1
MGP_CASTEiJ_P0082502 RNase_PH_C PF03725 2.1e-07 2
MGP_CASTEiJ_P0082504 RNase_PH PF01138 5.6e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Exosc5-001 MGP_CASTEiJ_T0082501 1020 235aa MGP_CASTEiJ_P0082501"/note="transcript_id=MGP_CASTEiJ_T0082501
- MGP_CASTEiJ_T0082502 1680 235aa MGP_CASTEiJ_P0082502"/note="transcript_id=MGP_CASTEiJ_T0082502
- MGP_CASTEiJ_T0082503 5056 No protein -
- MGP_CASTEiJ_T0082504 682 128aa MGP_CASTEiJ_P0082504"/note="transcript_id=MGP_CASTEiJ_T0082504
- MGP_CASTEiJ_T0082505 591 84aa MGP_CASTEiJ_P0082505"/note="transcript_id=MGP_CASTEiJ_T0082505
- MGP_CASTEiJ_T0082506 725 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P004114245.714329.7959mus_musculus_casteijMGP_CASTEiJ_P008250247.659631.0638

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0082351100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250210099.1489mus_caroliMGP_CAROLIEiJ_P007809710099.1489
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_ajMGP_AJ_P0082423100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_balbcjMGP_BALBcJ_P0082377100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_dba2jMGP_DBA2J_P0082086100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0082843100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_fvbnjMGP_FVBNJ_P0081959100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_c3hhejMGP_C3HHeJ_P0081974100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_lpjMGP_LPJ_P0082104100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0081982100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_cbajMGP_CBAJ_P0081922100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculusENSMUSP00000145948100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0083126100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250210099.5745mus_musculus_pwkphjMGP_PWKPhJ_P008193110099.5745
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250299.148998.7234mus_pahariMGP_PahariEiJ_P004642999.148998.7234
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_akrjMGP_AKRJ_P0082355100100
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250210099.5745mus_spretusMGP_SPRETEiJ_P008141010099.5745
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250285.531982.1277rattus_norvegicusENSRNOP0000008904474.444471.4815
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P008250210099.5745mus_spicilegusENSMSIP0000002999987.686687.3134
MGP_CASTEiJ_G0030918mus_musculus_casteijMGP_CASTEiJ_P0082502100100mus_musculus_wsbeijMGP_WSBEiJ_P0081026100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression