RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0029955 | Gene ID |
|
Accession |
- |
Symbol |
Polr1a |
Alias |
- |
Full Name |
polymerase (RNA) I polypeptide A |
Status |
Confidence |
Length |
72488 bases |
Strand |
Plus strand |
Position |
6 : 71523883 - 71596370 |
RNA binding domain |
RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0078246 |
RNA_pol_Rpb1_4 |
PF05000 |
1.5e-25 |
1 |
MGP_CASTEiJ_P0078246 |
RNA_pol_Rpb1_1 |
PF04997 |
2.7e-21 |
2 |
MGP_CASTEiJ_P0078246 |
RNA_pol_Rpb1_5 |
PF04998 |
6.6e-103 |
3 |
MGP_CASTEiJ_P0078246 |
RNA_pol_Rpb1_2 |
PF00623 |
3.5e-70 |
4 |
MGP_CASTEiJ_P0078246 |
RNA_pol_Rpb1_3 |
PF04983 |
9.1e-37 |
5 |
MGP_CASTEiJ_P0078245 |
RNA_pol_Rpb1_1 |
PF04997 |
1e-18 |
1 |
MGP_CASTEiJ_P0078254 |
RNA_pol_Rpb1_5 |
PF04998 |
1.5e-96 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Polr1a-001 |
MGP_CASTEiJ_T0078245 |
3394 |
282aa |
MGP_CASTEiJ_P0078245"/note="transcript_id=MGP_CASTEiJ_T0078245 |
- |
MGP_CASTEiJ_T0078246 |
9227 |
1717aa |
MGP_CASTEiJ_P0078246"/note="transcript_id=MGP_CASTEiJ_T0078246 |
- |
MGP_CASTEiJ_T0078247 |
1492 |
No protein |
- |
- |
MGP_CASTEiJ_T0078248 |
3302 |
No protein |
- |
- |
MGP_CASTEiJ_T0078249 |
356 |
No protein |
- |
- |
MGP_CASTEiJ_T0078250 |
352 |
No protein |
- |
- |
MGP_CASTEiJ_T0078251 |
584 |
No protein |
- |
- |
MGP_CASTEiJ_T0078252 |
625 |
47aa |
MGP_CASTEiJ_P0078252"/note="transcript_id=MGP_CASTEiJ_T0078252 |
- |
MGP_CASTEiJ_T0078253 |
554 |
No protein |
- |
- |
MGP_CASTEiJ_T0078254 |
4572 |
742aa |
MGP_CASTEiJ_P0078254"/note="transcript_id=MGP_CASTEiJ_T0078254 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0038254 | 49.9281 | 31.6547 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 40.4193 | 25.6261 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0029494 | 34.7208 | 21.4213 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 39.8369 | 24.5778 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0078020 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.3011 | 98.1945 | mus_caroli | MGP_CAROLIEiJ_P0074277 | 99.3011 | 98.1945 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_aj | MGP_AJ_P0078098 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_balbcj | MGP_BALBcJ_P0078042 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.4176 | 99.3011 | mus_musculus_dba2j | MGP_DBA2J_P0077779 | 99.3597 | 99.2433 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0078503 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_fvbnj | MGP_FVBNJ_P0077668 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.4176 | 99.3011 | mus_musculus_c3hhej | MGP_C3HHeJ_P0079264 | 99.3597 | 99.2433 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_lpj | MGP_LPJ_P0077808 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.8835 | 99.8253 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0077664 | 99.8835 | 99.8253 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.4176 | 99.3011 | mus_musculus_cbaj | MGP_CBAJ_P0077618 | 99.3597 | 99.2433 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus | ENSMUSP00000060858 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0078752 | 99.9418 | 99.8835 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.5923 | 99.5341 | mus_musculus_pwkphj | MGP_PWKPhJ_P0077666 | 99.5343 | 99.4761 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 97.4956 | 95.1077 | mus_pahari | MGP_PahariEiJ_P0050352 | 97.5524 | 95.1632 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.8835 | 99.8253 | mus_musculus_akrj | MGP_AKRJ_P0078013 | 99.8835 | 99.8253 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.5341 | 99.3011 | mus_spretus | MGP_SPRETEiJ_P0077166 | 97.713 | 97.4843 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 97.5539 | 94.4089 | rattus_norvegicus | ENSRNOP00000013587 | 97.6107 | 94.4639 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.5923 | 99.3593 | mus_spicilegus | ENSMSIP00000009468 | 99.5343 | 99.3015 |
MGP_CASTEiJ_G0029955 | mus_musculus_casteij | MGP_CASTEiJ_P0078246 | 99.9418 | 99.8835 | mus_musculus_wsbeij | MGP_WSBEiJ_P0076774 | 99.9418 | 99.8835 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |