Description

Ensembl ID MGP_CASTEiJ_G0029955 Gene ID Accession -
Symbol Polr1a Alias - Full Name polymerase (RNA) I polypeptide A
Status Confidence Length 72488 bases Strand Plus strand
Position 6 : 71523883 - 71596370 RNA binding domain RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0078246 RNA_pol_Rpb1_4 PF05000 1.5e-25 1
MGP_CASTEiJ_P0078246 RNA_pol_Rpb1_1 PF04997 2.7e-21 2
MGP_CASTEiJ_P0078246 RNA_pol_Rpb1_5 PF04998 6.6e-103 3
MGP_CASTEiJ_P0078246 RNA_pol_Rpb1_2 PF00623 3.5e-70 4
MGP_CASTEiJ_P0078246 RNA_pol_Rpb1_3 PF04983 9.1e-37 5
MGP_CASTEiJ_P0078245 RNA_pol_Rpb1_1 PF04997 1e-18 1
MGP_CASTEiJ_P0078254 RNA_pol_Rpb1_5 PF04998 1.5e-96 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr1a-001 MGP_CASTEiJ_T0078245 3394 282aa MGP_CASTEiJ_P0078245"/note="transcript_id=MGP_CASTEiJ_T0078245
- MGP_CASTEiJ_T0078246 9227 1717aa MGP_CASTEiJ_P0078246"/note="transcript_id=MGP_CASTEiJ_T0078246
- MGP_CASTEiJ_T0078247 1492 No protein -
- MGP_CASTEiJ_T0078248 3302 No protein -
- MGP_CASTEiJ_T0078249 356 No protein -
- MGP_CASTEiJ_T0078250 352 No protein -
- MGP_CASTEiJ_T0078251 584 No protein -
- MGP_CASTEiJ_T0078252 625 47aa MGP_CASTEiJ_P0078252"/note="transcript_id=MGP_CASTEiJ_T0078252
- MGP_CASTEiJ_T0078253 554 No protein -
- MGP_CASTEiJ_T0078254 4572 742aa MGP_CASTEiJ_P0078254"/note="transcript_id=MGP_CASTEiJ_T0078254

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P003825449.928131.6547mus_musculus_casteijMGP_CASTEiJ_P007824640.419325.6261
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P002949434.720821.4213mus_musculus_casteijMGP_CASTEiJ_P007824639.836924.5778

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_129s1svimjMGP_129S1SvImJ_P007802099.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.301198.1945mus_caroliMGP_CAROLIEiJ_P007427799.301198.1945
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_ajMGP_AJ_P007809899.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_balbcjMGP_BALBcJ_P007804299.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.417699.3011mus_musculus_dba2jMGP_DBA2J_P007777999.359799.2433
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_c57bl6njMGP_C57BL6NJ_P007850399.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_fvbnjMGP_FVBNJ_P007766899.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.417699.3011mus_musculus_c3hhejMGP_C3HHeJ_P007926499.359799.2433
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_lpjMGP_LPJ_P007780899.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.883599.8253mus_musculus_nodshiltjMGP_NODShiLtJ_P007766499.883599.8253
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.417699.3011mus_musculus_cbajMGP_CBAJ_P007761899.359799.2433
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculusENSMUSP0000006085899.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_nzohlltjMGP_NZOHlLtJ_P007875299.941899.8835
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.592399.5341mus_musculus_pwkphjMGP_PWKPhJ_P007766699.534399.4761
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824697.495695.1077mus_pahariMGP_PahariEiJ_P005035297.552495.1632
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.883599.8253mus_musculus_akrjMGP_AKRJ_P007801399.883599.8253
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.534199.3011mus_spretusMGP_SPRETEiJ_P007716697.71397.4843
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824697.553994.4089rattus_norvegicusENSRNOP0000001358797.610794.4639
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.592399.3593mus_spicilegusENSMSIP0000000946899.534399.3015
MGP_CASTEiJ_G0029955mus_musculus_casteijMGP_CASTEiJ_P007824699.941899.8835mus_musculus_wsbeijMGP_WSBEiJ_P007677499.941899.8835

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression