RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0029461 | Gene ID |
|
Accession |
- |
Symbol |
Ptcd1 |
Alias |
- |
Full Name |
pentatricopeptide repeat domain 1 |
Status |
Confidence |
Length |
22246 bases |
Strand |
Minus strand |
Position |
5 : 148979290 - 149001535 |
RNA binding domain |
PPR_3 , PPR_long , PPR |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0076013 |
PPR_3 |
PF13812 |
1.4e-28 |
1 |
MGP_CASTEiJ_P0076013 |
PPR_3 |
PF13812 |
1.4e-28 |
2 |
MGP_CASTEiJ_P0076013 |
PPR_3 |
PF13812 |
1.4e-28 |
3 |
MGP_CASTEiJ_P0076013 |
PPR_long |
PF17177 |
2.4e-19 |
4 |
MGP_CASTEiJ_P0076013 |
PPR |
PF01535 |
9.1e-18 |
5 |
MGP_CASTEiJ_P0076013 |
PPR |
PF01535 |
9.1e-18 |
6 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Ptcd1-001 |
MGP_CASTEiJ_T0076013 |
3077 |
695aa |
MGP_CASTEiJ_P0076013"/note="transcript_id=MGP_CASTEiJ_T0076013 |
- |
MGP_CASTEiJ_T0076014 |
273 |
20aa |
MGP_CASTEiJ_P0076014"/note="transcript_id=MGP_CASTEiJ_T0076014 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0074579 | 42.6934 | 24.0688 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 21.4388 | 12.0863 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.4245 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0075823 | 99.7122 | 99.4245 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 98.4173 | 97.4101 | mus_caroli | MGP_CAROLIEiJ_P0072138 | 98.4173 | 97.4101 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.5683 | mus_musculus_aj | MGP_AJ_P0075900 | 99.7122 | 99.5683 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.5683 | mus_musculus_balbcj | MGP_BALBcJ_P0075849 | 99.7122 | 99.5683 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.5683 | mus_musculus_dba2j | MGP_DBA2J_P0075578 | 99.7122 | 99.5683 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.2806 | 99.1367 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0076310 | 99.2806 | 99.1367 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.5683 | 99.2806 | mus_musculus_fvbnj | MGP_FVBNJ_P0075469 | 99.5683 | 99.2806 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.5683 | mus_musculus_c3hhej | MGP_C3HHeJ_P0075469 | 99.7122 | 99.5683 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.4245 | mus_musculus_lpj | MGP_LPJ_P0075624 | 99.7122 | 99.4245 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.5683 | 99.2806 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0075481 | 99.5683 | 99.2806 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.4245 | mus_musculus_cbaj | MGP_CBAJ_P0075420 | 99.7122 | 99.4245 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.2806 | 99.1367 | mus_musculus | ENSMUSP00000031628 | 99.2806 | 99.1367 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.2806 | 98.9928 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0076557 | 99.2806 | 98.9928 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.4245 | 98.9928 | mus_musculus_pwkphj | MGP_PWKPhJ_P0075464 | 99.4245 | 98.9928 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 95.9712 | 93.9568 | mus_pahari | MGP_PahariEiJ_P0060349 | 96.1095 | 94.0922 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.7122 | 99.4245 | mus_musculus_akrj | MGP_AKRJ_P0075804 | 99.7122 | 99.4245 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.2806 | 98.705 | mus_spretus | MGP_SPRETEiJ_P0074957 | 99.2806 | 98.705 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 92.518 | 88.3453 | rattus_norvegicus | ENSRNOP00000068093 | 93.7318 | 89.5044 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 98.8489 | 98.4173 | mus_spicilegus | ENSMSIP00000034713 | 98.8489 | 98.4173 |
MGP_CASTEiJ_G0029461 | mus_musculus_casteij | MGP_CASTEiJ_P0076013 | 99.2806 | 98.9928 | mus_musculus_wsbeij | MGP_WSBEiJ_P0074601 | 99.2806 | 98.9928 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |