Description

Ensembl ID MGP_CASTEiJ_G0029461 Gene ID Accession -
Symbol Ptcd1 Alias - Full Name pentatricopeptide repeat domain 1
Status Confidence Length 22246 bases Strand Minus strand
Position 5 : 148979290 - 149001535 RNA binding domain PPR_3 , PPR_long , PPR
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0076013 PPR_3 PF13812 1.4e-28 1
MGP_CASTEiJ_P0076013 PPR_3 PF13812 1.4e-28 2
MGP_CASTEiJ_P0076013 PPR_3 PF13812 1.4e-28 3
MGP_CASTEiJ_P0076013 PPR_long PF17177 2.4e-19 4
MGP_CASTEiJ_P0076013 PPR PF01535 9.1e-18 5
MGP_CASTEiJ_P0076013 PPR PF01535 9.1e-18 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Ptcd1-001 MGP_CASTEiJ_T0076013 3077 695aa MGP_CASTEiJ_P0076013"/note="transcript_id=MGP_CASTEiJ_T0076013
- MGP_CASTEiJ_T0076014 273 20aa MGP_CASTEiJ_P0076014"/note="transcript_id=MGP_CASTEiJ_T0076014

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007457942.693424.0688mus_musculus_casteijMGP_CASTEiJ_P007601321.438812.0863

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.4245mus_musculus_129s1svimjMGP_129S1SvImJ_P007582399.712299.4245
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601398.417397.4101mus_caroliMGP_CAROLIEiJ_P007213898.417397.4101
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.5683mus_musculus_ajMGP_AJ_P007590099.712299.5683
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.5683mus_musculus_balbcjMGP_BALBcJ_P007584999.712299.5683
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.5683mus_musculus_dba2jMGP_DBA2J_P007557899.712299.5683
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.280699.1367mus_musculus_c57bl6njMGP_C57BL6NJ_P007631099.280699.1367
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.568399.2806mus_musculus_fvbnjMGP_FVBNJ_P007546999.568399.2806
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.5683mus_musculus_c3hhejMGP_C3HHeJ_P007546999.712299.5683
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.4245mus_musculus_lpjMGP_LPJ_P007562499.712299.4245
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.568399.2806mus_musculus_nodshiltjMGP_NODShiLtJ_P007548199.568399.2806
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.4245mus_musculus_cbajMGP_CBAJ_P007542099.712299.4245
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.280699.1367mus_musculusENSMUSP0000003162899.280699.1367
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.280698.9928mus_musculus_nzohlltjMGP_NZOHlLtJ_P007655799.280698.9928
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.424598.9928mus_musculus_pwkphjMGP_PWKPhJ_P007546499.424598.9928
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601395.971293.9568mus_pahariMGP_PahariEiJ_P006034996.109594.0922
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.712299.4245mus_musculus_akrjMGP_AKRJ_P007580499.712299.4245
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.280698.705mus_spretusMGP_SPRETEiJ_P007495799.280698.705
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601392.51888.3453rattus_norvegicusENSRNOP0000006809393.731889.5044
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601398.848998.4173mus_spicilegusENSMSIP0000003471398.848998.4173
MGP_CASTEiJ_G0029461mus_musculus_casteijMGP_CASTEiJ_P007601399.280698.9928mus_musculus_wsbeijMGP_WSBEiJ_P007460199.280698.9928

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression