RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_CASTEiJ_G0029139	Gene ID		Accession	-
Symbol	Atxn2	Alias	-	Full Name	ataxin 2
Status	Confidence	Length	124675 bases	Strand	Plus strand
Position	5 : 123651095 - 123775769	RNA binding domain	LsmAD , PAM2 , SM-ATX
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0074228	LsmAD	PF06741	2.8e-15	1
MGP_CASTEiJ_P0074228	PAM2	PF07145	6e-07	2
MGP_CASTEiJ_P0074226	LsmAD	PF06741	4.6e-15	1
MGP_CASTEiJ_P0074226	PAM2	PF07145	1.1e-06	2
MGP_CASTEiJ_P0074226	SM-ATX	PF14438	2.6e-20	3
MGP_CASTEiJ_P0074229	LsmAD	PF06741	5.7e-07	1
MGP_CASTEiJ_P0074231	PAM2	PF07145	1.4e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Atxn2-003	MGP_CASTEiJ_T0074225	461	No protein	-
-	MGP_CASTEiJ_T0074226	4335	1249aa	MGP_CASTEiJ_P0074226"/note="transcript_id=MGP_CASTEiJ_T0074226
-	MGP_CASTEiJ_T0074227	441	No protein	-
-	MGP_CASTEiJ_T0074228	3293	929aa	MGP_CASTEiJ_P0074228"/note="transcript_id=MGP_CASTEiJ_T0074228
-	MGP_CASTEiJ_T0074229	990	329aa	MGP_CASTEiJ_P0074229"/note="transcript_id=MGP_CASTEiJ_T0074229
-	MGP_CASTEiJ_T0074230	3130	No protein	-
-	MGP_CASTEiJ_T0074231	2343	662aa	MGP_CASTEiJ_P0074231"/note="transcript_id=MGP_CASTEiJ_T0074231
-	MGP_CASTEiJ_T0074232	1003	No protein	-
-	MGP_CASTEiJ_T0074233	756	No protein	-
-	MGP_CASTEiJ_T0074234	240	No protein	-
-	MGP_CASTEiJ_T0074235	754	No protein	-
-	MGP_CASTEiJ_T0074236	6944	No protein	-
-	MGP_CASTEiJ_T0074237	891	234aa	MGP_CASTEiJ_P0074237"/note="transcript_id=MGP_CASTEiJ_T0074237
-	MGP_CASTEiJ_T0074238	1465	No protein	-
-	MGP_CASTEiJ_T0074239	397	65aa	MGP_CASTEiJ_P0074239"/note="transcript_id=MGP_CASTEiJ_T0074239
-	MGP_CASTEiJ_T0074240	482	No protein	-
-	MGP_CASTEiJ_T0074241	578	No protein	-
-	MGP_CASTEiJ_T0074242	388	96aa	MGP_CASTEiJ_P0074242"/note="transcript_id=MGP_CASTEiJ_T0074242
-	MGP_CASTEiJ_T0074243	411	63aa	MGP_CASTEiJ_P0074243"/note="transcript_id=MGP_CASTEiJ_T0074243

Gene Model

Click here to download MGP_CASTEiJ_G0029139's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0029139's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0086601	56.6606	41.6058	mus_musculus_casteij	MGP_CASTEiJ_P0074226	49.7198	36.5092

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.2386	98.2386	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0074027	98.8719	98.8719
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.1585	97.8383	mus_caroli	MGP_CAROLIEiJ_P0070478	95.1125	94.8022
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.8791	98.8791	mus_musculus_aj	MGP_AJ_P0074103	96.0342	96.0342
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	96.5572	96.5572	mus_musculus_balbcj	MGP_BALBcJ_P0074041	97.2581	97.2581
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.799	98.799	mus_musculus_dba2j	MGP_DBA2J_P0073771	97.5494	97.5494
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.799	98.799	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0074510	98.6411	98.6411
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	86.1489	85.9888	mus_musculus_fvbnj	MGP_FVBNJ_P0073671	99.8145	99.6289
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.8791	98.8791	mus_musculus_c3hhej	MGP_C3HHeJ_P0073676	96.3339	96.3339
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	72.7782	72.1377	mus_musculus_lpj	MGP_LPJ_P0073833	97.8471	96.986
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.2386	98.2386	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0073668	99.1115	99.1115
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.6389	98.6389	mus_musculus_cbaj	MGP_CBAJ_P0073630	99.7571	99.7571
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.8791	98.8791	mus_musculus	ENSMUSP00000056715	96.0342	96.0342
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.6389	98.6389	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0074745	99.0354	99.0354
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.6389	98.6389	mus_musculus_pwkphj	MGP_PWKPhJ_P0073675	99.5958	99.5958
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	91.5933	90.7126	mus_pahari	MGP_PahariEiJ_P0058691	93.9245	93.0213
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.799	98.799	mus_musculus_akrj	MGP_AKRJ_P0074011	95.1426	95.1426
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.4788	98.2386	mus_spretus	MGP_SPRETEiJ_P0073167	99.2736	99.0315
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	95.1962	93.755	rattus_norvegicus	ENSRNOP00000095616	85.111	83.8225
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	85.5084	84.7878	mus_spicilegus	ENSMSIP00000014535	96.2162	95.4054
MGP_CASTEiJ_G0029139	mus_musculus_casteij	MGP_CASTEiJ_P0074226	98.5588	98.5588	mus_musculus_wsbeij	MGP_WSBEiJ_P0072812	99.1942	99.1942

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression