Description

Ensembl ID MGP_CASTEiJ_G0028766 Gene ID Accession -
Symbol Polr2b Alias - Full Name polymerase (RNA) II (DNA directed) polypeptide B
Status Confidence Length 42011 bases Strand Plus strand
Position 5 : 76617621 - 76659631 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_1 PF04563 8.5e-68 1
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_3 PF04565 1.1e-23 2
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_7 PF04560 9.5e-34 3
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_2 PF04561 8.8e-56 4
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_6 PF00562 4.8e-128 5
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_4 PF04566 3e-24 6
MGP_CASTEiJ_P0072510 RNA_pol_Rpb2_5 PF04567 2.3e-16 7

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr2b-001 MGP_CASTEiJ_T0072510 4145 1174aa MGP_CASTEiJ_P0072510"/note="transcript_id=MGP_CASTEiJ_T0072510
- MGP_CASTEiJ_T0072511 262 No protein -
- MGP_CASTEiJ_T0072512 740 No protein -
- MGP_CASTEiJ_T0072513 509 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P002596660.547239.0115mus_musculus_casteijMGP_CASTEiJ_P007251058.432737.6491
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P005748546.167430.3965mus_musculus_casteijMGP_CASTEiJ_P007251044.633729.3867

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0072302100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P007251010099.9148mus_caroliMGP_CAROLIEiJ_P006879310099.9148
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_ajMGP_AJ_P0072385100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_balbcjMGP_BALBcJ_P0072315100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_dba2jMGP_DBA2J_P0072048100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0072779100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_fvbnjMGP_FVBNJ_P0071949100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_c3hhejMGP_C3HHeJ_P0071958100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_lpjMGP_LPJ_P0072097100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0071973100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_cbajMGP_CBAJ_P0071909100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculusENSMUSP00000031167100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0072989100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_pwkphjMGP_PWKPhJ_P0071977100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P007251010099.9148mus_pahariMGP_PahariEiJ_P003197310099.9148
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_akrjMGP_AKRJ_P0072303100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_spretusMGP_SPRETEiJ_P0071447100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P007251010099.9148rattus_norvegicusENSRNOP0000003078110099.9148
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_spicilegusENSMSIP00000024197100100
MGP_CASTEiJ_G0028766mus_musculus_casteijMGP_CASTEiJ_P0072510100100mus_musculus_wsbeijMGP_WSBEiJ_P0071105100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression