RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_CASTEiJ_G0028088	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	3696 bases	Strand	Minus strand
Position	4 : 134924637 - 134928332	RNA binding domain	Ribosomal_L5 , Ribosomal_L5_C
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0068773	Ribosomal_L5	PF00281	2.9e-23	1
MGP_CASTEiJ_P0068773	Ribosomal_L5_C	PF00673	2.4e-21	2
MGP_CASTEiJ_P0068770	Ribosomal_L5	PF00281	3.2e-23	1
MGP_CASTEiJ_P0068770	Ribosomal_L5_C	PF00673	2.6e-21	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_CASTEiJ_T0068768	430	No protein	-
-	MGP_CASTEiJ_T0068769	606	No protein	-
-	MGP_CASTEiJ_T0068770	833	178aa	MGP_CASTEiJ_P0068770"/note="transcript_id=MGP_CASTEiJ_T0068770
-	MGP_CASTEiJ_T0068771	313	No protein	-
-	MGP_CASTEiJ_T0068772	808	No protein	-
-	MGP_CASTEiJ_T0068773	622	172aa	MGP_CASTEiJ_P0068773"/note="transcript_id=MGP_CASTEiJ_T0068773
-	MGP_CASTEiJ_T0068774	482	No protein	-
-	MGP_CASTEiJ_T0068775	917	No protein	-
-	MGP_CASTEiJ_T0068776	843	No protein	-
-	MGP_CASTEiJ_T0068777	397	No protein	-

Gene Model

Click here to download MGP_CASTEiJ_G0028088's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0028088's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0048836	55.6213	48.5207	mus_musculus_casteij	MGP_CASTEiJ_P0068770	52.809	46.0674
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0047693	97.7528	96.6292	mus_musculus_casteij	MGP_CASTEiJ_P0068770	97.7528	96.6292

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0068659	100	100
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0069124	100	100
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_musculus_cbaj	MGP_CBAJ_P0068250	100	100
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_musculus	ENSMUSP00000099595	100	100
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_pahari	MGP_PahariEiJ_P0080311	100	100
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	91.573	89.8876	rattus_norvegicus	ENSRNOP00000037110	86.7021	85.1064
MGP_CASTEiJ_G0028088	mus_musculus_casteij	MGP_CASTEiJ_P0068770	100	100	mus_musculus_wsbeij	MGP_WSBEiJ_P0067491	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression