Description

Ensembl ID MGP_CASTEiJ_G0027982 Gene ID Accession -
Symbol Pum1 Alias - Full Name pumilio RNA-binding family member 1
Status Confidence Length 123317 bases Strand Plus strand
Position 4 : 129028985 - 129152301 RNA binding domain PUF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 1
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 2
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 3
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 4
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 5
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 6
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 7
MGP_CASTEiJ_P0068246 PUF PF00806 3.1e-81 8
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 1
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 2
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 3
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 4
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 5
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 6
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 7
MGP_CASTEiJ_P0068249 PUF PF00806 2.4e-80 8
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 1
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 2
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 3
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 4
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 5
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 6
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 7
MGP_CASTEiJ_P0068245 PUF PF00806 2e-79 8
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 1
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 2
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 3
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 4
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 5
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 6
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 7
MGP_CASTEiJ_P0068250 PUF PF00806 4.2e-79 8
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 1
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 2
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 3
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 4
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 5
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 6
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 7
MGP_CASTEiJ_P0068244 PUF PF00806 4.2e-79 8

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Pum1-001 MGP_CASTEiJ_T0068244 5389 1189aa MGP_CASTEiJ_P0068244"/note="transcript_id=MGP_CASTEiJ_T0068244
- MGP_CASTEiJ_T0068245 5058 1092aa MGP_CASTEiJ_P0068245"/note="transcript_id=MGP_CASTEiJ_T0068245
- MGP_CASTEiJ_T0068246 4614 944aa MGP_CASTEiJ_P0068246"/note="transcript_id=MGP_CASTEiJ_T0068246
- MGP_CASTEiJ_T0068247 1274 No protein -
- MGP_CASTEiJ_T0068248 693 218aa MGP_CASTEiJ_P0068248"/note="transcript_id=MGP_CASTEiJ_T0068248
- MGP_CASTEiJ_T0068249 4017 1186aa MGP_CASTEiJ_P0068249"/note="transcript_id=MGP_CASTEiJ_T0068249
- MGP_CASTEiJ_T0068250 3991 1188aa MGP_CASTEiJ_P0068250"/note="transcript_id=MGP_CASTEiJ_T0068250

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P003404586.210178.2364mus_musculus_casteijMGP_CASTEiJ_P006824477.291870.143

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0068160100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824410099.7477mus_caroliMGP_CAROLIEiJ_P006475110099.7477
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_ajMGP_AJ_P0068217100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_balbcjMGP_BALBcJ_P0068139100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_dba2jMGP_DBA2J_P0067887100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0068629100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824499.915999.9159mus_musculus_fvbnjMGP_FVBNJ_P006779899.915999.9159
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_c3hhejMGP_C3HHeJ_P0067808100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_lpjMGP_LPJ_P0067983100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824499.663699.6636mus_musculus_nodshiltjMGP_NODShiLtJ_P006780399.663699.6636
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_cbajMGP_CBAJ_P0067754100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculusENSMUSP00000030315100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0068811100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_pwkphjMGP_PWKPhJ_P0067753100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824410099.8318mus_pahariMGP_PahariEiJ_P007983510099.8318
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_akrjMGP_AKRJ_P0068128100100
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824499.915999.8318mus_spretusMGP_SPRETEiJ_P006726999.915999.8318
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824499.663699.4113rattus_norvegicusENSRNOP0000001583199.496299.2443
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P006824499.915999.8318mus_spicilegusENSMSIP0000003828610099.9158
MGP_CASTEiJ_G0027982mus_musculus_casteijMGP_CASTEiJ_P0068244100100mus_musculus_wsbeijMGP_WSBEiJ_P0066993100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression