RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0027982 | Gene ID |
|
Accession |
- |
Symbol |
Pum1 |
Alias |
- |
Full Name |
pumilio RNA-binding family member 1 |
Status |
Confidence |
Length |
123317 bases |
Strand |
Plus strand |
Position |
4 : 129028985 - 129152301 |
RNA binding domain |
PUF |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
1 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
2 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
3 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
4 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
5 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
6 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
7 |
MGP_CASTEiJ_P0068246 |
PUF |
PF00806 |
3.1e-81 |
8 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
1 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
2 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
3 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
4 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
5 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
6 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
7 |
MGP_CASTEiJ_P0068249 |
PUF |
PF00806 |
2.4e-80 |
8 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
1 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
2 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
3 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
4 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
5 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
6 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
7 |
MGP_CASTEiJ_P0068245 |
PUF |
PF00806 |
2e-79 |
8 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
1 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
2 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
3 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
4 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
5 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
6 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
7 |
MGP_CASTEiJ_P0068250 |
PUF |
PF00806 |
4.2e-79 |
8 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
1 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
2 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
3 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
4 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
5 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
6 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
7 |
MGP_CASTEiJ_P0068244 |
PUF |
PF00806 |
4.2e-79 |
8 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Pum1-001 |
MGP_CASTEiJ_T0068244 |
5389 |
1189aa |
MGP_CASTEiJ_P0068244"/note="transcript_id=MGP_CASTEiJ_T0068244 |
- |
MGP_CASTEiJ_T0068245 |
5058 |
1092aa |
MGP_CASTEiJ_P0068245"/note="transcript_id=MGP_CASTEiJ_T0068245 |
- |
MGP_CASTEiJ_T0068246 |
4614 |
944aa |
MGP_CASTEiJ_P0068246"/note="transcript_id=MGP_CASTEiJ_T0068246 |
- |
MGP_CASTEiJ_T0068247 |
1274 |
No protein |
- |
- |
MGP_CASTEiJ_T0068248 |
693 |
218aa |
MGP_CASTEiJ_P0068248"/note="transcript_id=MGP_CASTEiJ_T0068248 |
- |
MGP_CASTEiJ_T0068249 |
4017 |
1186aa |
MGP_CASTEiJ_P0068249"/note="transcript_id=MGP_CASTEiJ_T0068249 |
- |
MGP_CASTEiJ_T0068250 |
3991 |
1188aa |
MGP_CASTEiJ_P0068250"/note="transcript_id=MGP_CASTEiJ_T0068250 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0034045 | 86.2101 | 78.2364 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 77.2918 | 70.143 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0068160 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 99.7477 | mus_caroli | MGP_CAROLIEiJ_P0064751 | 100 | 99.7477 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0068217 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0068139 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0067887 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0068629 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 99.9159 | 99.9159 | mus_musculus_fvbnj | MGP_FVBNJ_P0067798 | 99.9159 | 99.9159 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0067808 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0067983 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 99.6636 | 99.6636 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0067803 | 99.6636 | 99.6636 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0067754 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus | ENSMUSP00000030315 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0068811 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0067753 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 99.8318 | mus_pahari | MGP_PahariEiJ_P0079835 | 100 | 99.8318 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0068128 | 100 | 100 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 99.9159 | 99.8318 | mus_spretus | MGP_SPRETEiJ_P0067269 | 99.9159 | 99.8318 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 99.6636 | 99.4113 | rattus_norvegicus | ENSRNOP00000015831 | 99.4962 | 99.2443 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 99.9159 | 99.8318 | mus_spicilegus | ENSMSIP00000038286 | 100 | 99.9158 |
MGP_CASTEiJ_G0027982 | mus_musculus_casteij | MGP_CASTEiJ_P0068244 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0066993 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |