RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_CASTEiJ_G0027014	Gene ID		Accession	-
Symbol	Gm10263	Alias	-	Full Name	predicted gene 10263
Status	Confidence	Length	300 bases	Strand	Plus strand
Position	3 : 127563135 - 127563434	RNA binding domain	Ribosomal_S28e
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0063560	Ribosomal_S28e	PF01200	2.5e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Gm10263-201	MGP_CASTEiJ_T0063560	300	69aa	MGP_CASTEiJ_P0063560"/note="transcript_id=MGP_CASTEiJ_T0063560

Gene Model

Click here to download MGP_CASTEiJ_G0027014's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0027014's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0046709	97.1014	97.1014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	97.1014

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	72.4638	71.0145	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0037550	72.4638	71.0145
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	97.1014	mus_caroli	MGP_CAROLIEiJ_P0044034	97.1014	97.1014
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	71.0145	69.5652	mus_musculus_aj	MGP_AJ_P0037494	75.3846	73.8462
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	95.6522	mus_musculus_balbcj	MGP_BALBcJ_P0037511	97.1014	95.6522
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	95.6522	mus_musculus_cbaj	MGP_CBAJ_P0037170	97.1014	95.6522
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	95.6522	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0038024	97.1014	95.6522
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	98.5507	97.1014	mus_musculus_pwkphj	MGP_PWKPhJ_P0051838	98.5507	97.1014
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	97.1014	mus_pahari	MGP_PahariEiJ_P0043589	97.1014	97.1014
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	89.8551	89.8551	rattus_norvegicus	ENSRNOP00000044197	89.8551	89.8551
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	95.6522	95.6522	rattus_norvegicus	ENSRNOP00000095803	95.6522	95.6522
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	94.2029	92.7536	rattus_norvegicus	ENSRNOP00000039276	94.2029	92.7536
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	97.1014	rattus_norvegicus	ENSRNOP00000078298	97.1014	97.1014
MGP_CASTEiJ_G0027014	mus_musculus_casteij	MGP_CASTEiJ_P0063560	97.1014	97.1014	rattus_norvegicus	ENSRNOP00000060568	97.1014	97.1014

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression