RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0026328 | Gene ID |
|
Accession |
- |
Symbol |
Exosc9 |
Alias |
- |
Full Name |
exosome component 9 |
Status |
Confidence |
Length |
13023 bases |
Strand |
Plus strand |
Position |
3 : 34230047 - 34243069 |
RNA binding domain |
RNase_PH , RNase_PH_C |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0060457 |
RNase_PH |
PF01138 |
9.6e-23 |
1 |
MGP_CASTEiJ_P0060457 |
RNase_PH_C |
PF03725 |
1.6e-09 |
2 |
MGP_CASTEiJ_P0060458 |
RNase_PH |
PF01138 |
3.1e-22 |
1 |
MGP_CASTEiJ_P0060458 |
RNase_PH_C |
PF03725 |
2.9e-12 |
2 |
MGP_CASTEiJ_P0060461 |
RNase_PH |
PF01138 |
1.5e-13 |
1 |
MGP_CASTEiJ_P0060461 |
RNase_PH_C |
PF03725 |
2.3e-07 |
2 |
MGP_CASTEiJ_P0060463 |
RNase_PH_C |
PF03725 |
4.1e-09 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Exosc9-001 |
MGP_CASTEiJ_T0060457 |
1227 |
242aa |
MGP_CASTEiJ_P0060457"/note="transcript_id=MGP_CASTEiJ_T0060457 |
- |
MGP_CASTEiJ_T0060458 |
1671 |
438aa |
MGP_CASTEiJ_P0060458"/note="transcript_id=MGP_CASTEiJ_T0060458 |
- |
MGP_CASTEiJ_T0060459 |
1769 |
No protein |
- |
- |
MGP_CASTEiJ_T0060460 |
913 |
No protein |
- |
- |
MGP_CASTEiJ_T0060461 |
647 |
147aa |
MGP_CASTEiJ_P0060461"/note="transcript_id=MGP_CASTEiJ_T0060461 |
- |
MGP_CASTEiJ_T0060462 |
2436 |
No protein |
- |
- |
MGP_CASTEiJ_T0060463 |
515 |
131aa |
MGP_CASTEiJ_P0060463"/note="transcript_id=MGP_CASTEiJ_T0060463 |
- |
MGP_CASTEiJ_T0060464 |
682 |
111aa |
MGP_CASTEiJ_P0060464"/note="transcript_id=MGP_CASTEiJ_T0060464 |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060773 | 48.913 | 26.4493 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 30.8219 | 16.6667 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0095536 | 46.0481 | 28.1787 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 30.5936 | 18.7215 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0060521 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.0868 | 98.4018 | mus_caroli | MGP_CAROLIEiJ_P0057365 | 99.5413 | 98.8532 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_aj | MGP_AJ_P0060538 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 100 | 100 | mus_musculus_balbcj | MGP_BALBcJ_P0060472 | 100 | 100 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_dba2j | MGP_DBA2J_P0060234 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0060947 | 100 | 100 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0060221 | 100 | 100 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_c3hhej | MGP_C3HHeJ_P0060157 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_lpj | MGP_LPJ_P0060378 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0060191 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_cbaj | MGP_CBAJ_P0060133 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 100 | 100 | mus_musculus | ENSMUSP00000029269 | 100 | 100 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0061130 | 100 | 99.7712 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0060014 | 100 | 100 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 98.4018 | 97.032 | mus_pahari | MGP_PahariEiJ_P0068324 | 99.0805 | 97.7011 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.7717 | mus_musculus_akrj | MGP_AKRJ_P0060475 | 99.7717 | 99.7717 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.7717 | mus_spretus | MGP_SPRETEiJ_P0059625 | 99.7717 | 99.7717 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.0868 | 97.9452 | rattus_norvegicus | ENSRNOP00000020662 | 99.3135 | 98.1693 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.5434 | 99.5434 | mus_spicilegus | ENSMSIP00000011605 | 99.5434 | 99.5434 |
MGP_CASTEiJ_G0026328 | mus_musculus_casteij | MGP_CASTEiJ_P0060458 | 99.7717 | 99.5434 | mus_musculus_wsbeij | MGP_WSBEiJ_P0059435 | 100 | 99.7712 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |