Description

Ensembl ID MGP_CASTEiJ_G0026328 Gene ID Accession -
Symbol Exosc9 Alias - Full Name exosome component 9
Status Confidence Length 13023 bases Strand Plus strand
Position 3 : 34230047 - 34243069 RNA binding domain RNase_PH , RNase_PH_C
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0060457 RNase_PH PF01138 9.6e-23 1
MGP_CASTEiJ_P0060457 RNase_PH_C PF03725 1.6e-09 2
MGP_CASTEiJ_P0060458 RNase_PH PF01138 3.1e-22 1
MGP_CASTEiJ_P0060458 RNase_PH_C PF03725 2.9e-12 2
MGP_CASTEiJ_P0060461 RNase_PH PF01138 1.5e-13 1
MGP_CASTEiJ_P0060461 RNase_PH_C PF03725 2.3e-07 2
MGP_CASTEiJ_P0060463 RNase_PH_C PF03725 4.1e-09 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Exosc9-001 MGP_CASTEiJ_T0060457 1227 242aa MGP_CASTEiJ_P0060457"/note="transcript_id=MGP_CASTEiJ_T0060457
- MGP_CASTEiJ_T0060458 1671 438aa MGP_CASTEiJ_P0060458"/note="transcript_id=MGP_CASTEiJ_T0060458
- MGP_CASTEiJ_T0060459 1769 No protein -
- MGP_CASTEiJ_T0060460 913 No protein -
- MGP_CASTEiJ_T0060461 647 147aa MGP_CASTEiJ_P0060461"/note="transcript_id=MGP_CASTEiJ_T0060461
- MGP_CASTEiJ_T0060462 2436 No protein -
- MGP_CASTEiJ_T0060463 515 131aa MGP_CASTEiJ_P0060463"/note="transcript_id=MGP_CASTEiJ_T0060463
- MGP_CASTEiJ_T0060464 682 111aa MGP_CASTEiJ_P0060464"/note="transcript_id=MGP_CASTEiJ_T0060464

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006077348.91326.4493mus_musculus_casteijMGP_CASTEiJ_P006045830.821916.6667
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P009553646.048128.1787mus_musculus_casteijMGP_CASTEiJ_P006045830.593618.7215

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_129s1svimjMGP_129S1SvImJ_P006052110099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.086898.4018mus_caroliMGP_CAROLIEiJ_P005736599.541398.8532
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_ajMGP_AJ_P006053810099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P0060458100100mus_musculus_balbcjMGP_BALBcJ_P0060472100100
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_dba2jMGP_DBA2J_P006023410099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P0060458100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0060947100100
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P0060458100100mus_musculus_fvbnjMGP_FVBNJ_P0060221100100
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_c3hhejMGP_C3HHeJ_P006015710099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_lpjMGP_LPJ_P006037810099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_nodshiltjMGP_NODShiLtJ_P006019110099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_cbajMGP_CBAJ_P006013310099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P0060458100100mus_musculusENSMUSP00000029269100100
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_nzohlltjMGP_NZOHlLtJ_P006113010099.7712
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P0060458100100mus_musculus_pwkphjMGP_PWKPhJ_P0060014100100
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045898.401897.032mus_pahariMGP_PahariEiJ_P006832499.080597.7011
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.7717mus_musculus_akrjMGP_AKRJ_P006047599.771799.7717
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.7717mus_spretusMGP_SPRETEiJ_P005962599.771799.7717
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.086897.9452rattus_norvegicusENSRNOP0000002066299.313598.1693
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.543499.5434mus_spicilegusENSMSIP0000001160599.543499.5434
MGP_CASTEiJ_G0026328mus_musculus_casteijMGP_CASTEiJ_P006045899.771799.5434mus_musculus_wsbeijMGP_WSBEiJ_P005943510099.7712

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression