RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0026316 | Gene ID |
|
Accession |
- |
Symbol |
Fxr1 |
Alias |
- |
Full Name |
fragile X mental retardation gene 1, autosomal homolog |
Status |
Confidence |
Length |
54379 bases |
Strand |
Plus strand |
Position |
3 : 31577740 - 31632118 |
RNA binding domain |
Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0060398 |
Agenet |
PF05641 |
1.2e-13 |
1 |
MGP_CASTEiJ_P0060398 |
FXR_C1 |
PF16096 |
1.9e-38 |
2 |
MGP_CASTEiJ_P0060398 |
KH_1 |
PF00013 |
1.3e-16 |
3 |
MGP_CASTEiJ_P0060398 |
KH_1 |
PF00013 |
1.3e-16 |
4 |
MGP_CASTEiJ_P0060398 |
KH_9 |
PF17904 |
1.5e-36 |
5 |
MGP_CASTEiJ_P0060398 |
FXMRP1_C_core |
PF12235 |
1.6e-33 |
6 |
MGP_CASTEiJ_P0060398 |
FXMRP1_C_core |
PF12235 |
1.6e-33 |
7 |
MGP_CASTEiJ_P0060397 |
Agenet |
PF05641 |
1.4e-13 |
1 |
MGP_CASTEiJ_P0060397 |
FXR_C1 |
PF16096 |
2.1e-38 |
2 |
MGP_CASTEiJ_P0060397 |
KH_1 |
PF00013 |
1.5e-16 |
3 |
MGP_CASTEiJ_P0060397 |
KH_1 |
PF00013 |
1.5e-16 |
4 |
MGP_CASTEiJ_P0060397 |
KH_9 |
PF17904 |
1.7e-36 |
5 |
MGP_CASTEiJ_P0060397 |
FXMRP1_C_core |
PF12235 |
4.9e-54 |
6 |
MGP_CASTEiJ_P0060399 |
Agenet |
PF05641 |
1.8e-13 |
1 |
MGP_CASTEiJ_P0060399 |
FXR_C1 |
PF16096 |
2.1e-38 |
2 |
MGP_CASTEiJ_P0060399 |
KH_1 |
PF00013 |
1.9e-16 |
3 |
MGP_CASTEiJ_P0060399 |
KH_1 |
PF00013 |
1.9e-16 |
4 |
MGP_CASTEiJ_P0060399 |
KH_9 |
PF17904 |
1.6e-36 |
5 |
MGP_CASTEiJ_P0060399 |
FXMRP1_C_core |
PF12235 |
9.4e-34 |
6 |
MGP_CASTEiJ_P0060399 |
FXMRP1_C_core |
PF12235 |
9.4e-34 |
7 |
MGP_CASTEiJ_P0060395 |
Agenet |
PF05641 |
2.3e-13 |
1 |
MGP_CASTEiJ_P0060395 |
FXR_C1 |
PF16096 |
5.4e-38 |
2 |
MGP_CASTEiJ_P0060395 |
KH_1 |
PF00013 |
2.4e-16 |
3 |
MGP_CASTEiJ_P0060395 |
KH_1 |
PF00013 |
2.4e-16 |
4 |
MGP_CASTEiJ_P0060395 |
KH_9 |
PF17904 |
1.9e-36 |
5 |
MGP_CASTEiJ_P0060395 |
FXMRP1_C_core |
PF12235 |
6.4e-54 |
6 |
MGP_CASTEiJ_P0060400 |
Agenet |
PF05641 |
1.6e-10 |
1 |
MGP_CASTEiJ_P0060400 |
FXR_C1 |
PF16096 |
2e-38 |
2 |
MGP_CASTEiJ_P0060400 |
KH_1 |
PF00013 |
1.5e-16 |
3 |
MGP_CASTEiJ_P0060400 |
KH_1 |
PF00013 |
1.5e-16 |
4 |
MGP_CASTEiJ_P0060400 |
KH_9 |
PF17904 |
1.6e-36 |
5 |
MGP_CASTEiJ_P0060400 |
FXMRP1_C_core |
PF12235 |
4.9e-54 |
6 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Fxr1-001 |
MGP_CASTEiJ_T0060395 |
2413 |
677aa |
MGP_CASTEiJ_P0060395"/note="transcript_id=MGP_CASTEiJ_T0060395 |
- |
MGP_CASTEiJ_T0060396 |
2158 |
54aa |
MGP_CASTEiJ_P0060396"/note="transcript_id=MGP_CASTEiJ_T0060396 |
- |
MGP_CASTEiJ_T0060397 |
2127 |
568aa |
MGP_CASTEiJ_P0060397"/note="transcript_id=MGP_CASTEiJ_T0060397 |
- |
MGP_CASTEiJ_T0060398 |
3014 |
539aa |
MGP_CASTEiJ_P0060398"/note="transcript_id=MGP_CASTEiJ_T0060398 |
- |
MGP_CASTEiJ_T0060399 |
2129 |
621aa |
MGP_CASTEiJ_P0060399"/note="transcript_id=MGP_CASTEiJ_T0060399 |
- |
MGP_CASTEiJ_T0060400 |
3118 |
559aa |
MGP_CASTEiJ_P0060400"/note="transcript_id=MGP_CASTEiJ_T0060400 |
- |
MGP_CASTEiJ_T0060401 |
651 |
No protein |
- |
- |
MGP_CASTEiJ_T0060402 |
646 |
132aa |
MGP_CASTEiJ_P0060402"/note="transcript_id=MGP_CASTEiJ_T0060402 |
- |
MGP_CASTEiJ_T0060403 |
2479 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026316 | | | | | | | | |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026316 | | | | | | | | |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |