Description

Ensembl ID MGP_CASTEiJ_G0026316 Gene ID Accession -
Symbol Fxr1 Alias - Full Name fragile X mental retardation gene 1, autosomal homolog
Status Confidence Length 54379 bases Strand Plus strand
Position 3 : 31577740 - 31632118 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0060398 Agenet PF05641 1.2e-13 1
MGP_CASTEiJ_P0060398 FXR_C1 PF16096 1.9e-38 2
MGP_CASTEiJ_P0060398 KH_1 PF00013 1.3e-16 3
MGP_CASTEiJ_P0060398 KH_1 PF00013 1.3e-16 4
MGP_CASTEiJ_P0060398 KH_9 PF17904 1.5e-36 5
MGP_CASTEiJ_P0060398 FXMRP1_C_core PF12235 1.6e-33 6
MGP_CASTEiJ_P0060398 FXMRP1_C_core PF12235 1.6e-33 7
MGP_CASTEiJ_P0060397 Agenet PF05641 1.4e-13 1
MGP_CASTEiJ_P0060397 FXR_C1 PF16096 2.1e-38 2
MGP_CASTEiJ_P0060397 KH_1 PF00013 1.5e-16 3
MGP_CASTEiJ_P0060397 KH_1 PF00013 1.5e-16 4
MGP_CASTEiJ_P0060397 KH_9 PF17904 1.7e-36 5
MGP_CASTEiJ_P0060397 FXMRP1_C_core PF12235 4.9e-54 6
MGP_CASTEiJ_P0060399 Agenet PF05641 1.8e-13 1
MGP_CASTEiJ_P0060399 FXR_C1 PF16096 2.1e-38 2
MGP_CASTEiJ_P0060399 KH_1 PF00013 1.9e-16 3
MGP_CASTEiJ_P0060399 KH_1 PF00013 1.9e-16 4
MGP_CASTEiJ_P0060399 KH_9 PF17904 1.6e-36 5
MGP_CASTEiJ_P0060399 FXMRP1_C_core PF12235 9.4e-34 6
MGP_CASTEiJ_P0060399 FXMRP1_C_core PF12235 9.4e-34 7
MGP_CASTEiJ_P0060395 Agenet PF05641 2.3e-13 1
MGP_CASTEiJ_P0060395 FXR_C1 PF16096 5.4e-38 2
MGP_CASTEiJ_P0060395 KH_1 PF00013 2.4e-16 3
MGP_CASTEiJ_P0060395 KH_1 PF00013 2.4e-16 4
MGP_CASTEiJ_P0060395 KH_9 PF17904 1.9e-36 5
MGP_CASTEiJ_P0060395 FXMRP1_C_core PF12235 6.4e-54 6
MGP_CASTEiJ_P0060400 Agenet PF05641 1.6e-10 1
MGP_CASTEiJ_P0060400 FXR_C1 PF16096 2e-38 2
MGP_CASTEiJ_P0060400 KH_1 PF00013 1.5e-16 3
MGP_CASTEiJ_P0060400 KH_1 PF00013 1.5e-16 4
MGP_CASTEiJ_P0060400 KH_9 PF17904 1.6e-36 5
MGP_CASTEiJ_P0060400 FXMRP1_C_core PF12235 4.9e-54 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Fxr1-001 MGP_CASTEiJ_T0060395 2413 677aa MGP_CASTEiJ_P0060395"/note="transcript_id=MGP_CASTEiJ_T0060395
- MGP_CASTEiJ_T0060396 2158 54aa MGP_CASTEiJ_P0060396"/note="transcript_id=MGP_CASTEiJ_T0060396
- MGP_CASTEiJ_T0060397 2127 568aa MGP_CASTEiJ_P0060397"/note="transcript_id=MGP_CASTEiJ_T0060397
- MGP_CASTEiJ_T0060398 3014 539aa MGP_CASTEiJ_P0060398"/note="transcript_id=MGP_CASTEiJ_T0060398
- MGP_CASTEiJ_T0060399 2129 621aa MGP_CASTEiJ_P0060399"/note="transcript_id=MGP_CASTEiJ_T0060399
- MGP_CASTEiJ_T0060400 3118 559aa MGP_CASTEiJ_P0060400"/note="transcript_id=MGP_CASTEiJ_T0060400
- MGP_CASTEiJ_T0060401 651 No protein -
- MGP_CASTEiJ_T0060402 646 132aa MGP_CASTEiJ_P0060402"/note="transcript_id=MGP_CASTEiJ_T0060402
- MGP_CASTEiJ_T0060403 2479 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026316

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026316

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression