Description

Ensembl ID MGP_CASTEiJ_G0026157 Gene ID Accession -
Symbol Lsm14b Alias - Full Name LSM family member 14B
Status Confidence Length 13811 bases Strand Plus strand
Position 2 : 182808659 - 182822469 RNA binding domain LSM14 , SM-ATX , FDF
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0059602 LSM14 PF12701 1.4e-29 1
MGP_CASTEiJ_P0059602 SM-ATX PF14438 3.5e-08 2
MGP_CASTEiJ_P0059602 FDF PF09532 1.6e-25 3
MGP_CASTEiJ_P0059603 LSM14 PF12701 1.5e-29 1
MGP_CASTEiJ_P0059603 SM-ATX PF14438 3.5e-08 2
MGP_CASTEiJ_P0059603 FDF PF09532 2e-25 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Lsm14b-001 MGP_CASTEiJ_T0059602 2529 385aa MGP_CASTEiJ_P0059602"/note="transcript_id=MGP_CASTEiJ_T0059602
- MGP_CASTEiJ_T0059603 2454 424aa MGP_CASTEiJ_P0059603"/note="transcript_id=MGP_CASTEiJ_T0059603
- MGP_CASTEiJ_T0059604 733 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P008336061.255450.6493mus_musculus_casteijMGP_CASTEiJ_P005960366.745355.1887

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_129s1svimjMGP_129S1SvImJ_P005966299.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_caroliMGP_CAROLIEiJ_P005655899.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_ajMGP_AJ_P005969499.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_balbcjMGP_BALBcJ_P005962499.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_dba2jMGP_DBA2J_P0059396100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0060092100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_fvbnjMGP_FVBNJ_P005937399.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_c3hhejMGP_C3HHeJ_P0059314100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_lpjMGP_LPJ_P005950399.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_nodshiltjMGP_NODShiLtJ_P005935999.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_cbajMGP_CBAJ_P005928899.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960390.801990.8019mus_musculusENSMUSP00000055036100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0060278100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_pwkphjMGP_PWKPhJ_P0059174100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.292499.0566mus_pahariMGP_PahariEiJ_P006755799.292499.0566
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.764299.7642mus_musculus_akrjMGP_AKRJ_P005963399.764299.7642
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_spretusMGP_SPRETEiJ_P0058758100100
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.056698.5849rattus_norvegicusENSRNOP0000007122783.832383.4331
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P005960399.528399.5283mus_spicilegusENSMSIP0000001881984.231584.2315
MGP_CASTEiJ_G0026157mus_musculus_casteijMGP_CASTEiJ_P0059603100100mus_musculus_wsbeijMGP_WSBEiJ_P0058590100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression