RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_CASTEiJ_G0026157 | Gene ID |
|
Accession |
- |
Symbol |
Lsm14b |
Alias |
- |
Full Name |
LSM family member 14B |
Status |
Confidence |
Length |
13811 bases |
Strand |
Plus strand |
Position |
2 : 182808659 - 182822469 |
RNA binding domain |
LSM14 , SM-ATX , FDF |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_CASTEiJ_P0059602 |
LSM14 |
PF12701 |
1.4e-29 |
1 |
MGP_CASTEiJ_P0059602 |
SM-ATX |
PF14438 |
3.5e-08 |
2 |
MGP_CASTEiJ_P0059602 |
FDF |
PF09532 |
1.6e-25 |
3 |
MGP_CASTEiJ_P0059603 |
LSM14 |
PF12701 |
1.5e-29 |
1 |
MGP_CASTEiJ_P0059603 |
SM-ATX |
PF14438 |
3.5e-08 |
2 |
MGP_CASTEiJ_P0059603 |
FDF |
PF09532 |
2e-25 |
3 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Lsm14b-001 |
MGP_CASTEiJ_T0059602 |
2529 |
385aa |
MGP_CASTEiJ_P0059602"/note="transcript_id=MGP_CASTEiJ_T0059602 |
- |
MGP_CASTEiJ_T0059603 |
2454 |
424aa |
MGP_CASTEiJ_P0059603"/note="transcript_id=MGP_CASTEiJ_T0059603 |
- |
MGP_CASTEiJ_T0059604 |
733 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0083360 | 61.2554 | 50.6493 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 66.7453 | 55.1887 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0059662 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_caroli | MGP_CAROLIEiJ_P0056558 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_aj | MGP_AJ_P0059694 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_balbcj | MGP_BALBcJ_P0059624 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0059396 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0060092 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_fvbnj | MGP_FVBNJ_P0059373 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0059314 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_lpj | MGP_LPJ_P0059503 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0059359 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_cbaj | MGP_CBAJ_P0059288 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 90.8019 | 90.8019 | mus_musculus | ENSMUSP00000055036 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0060278 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_pwkphj | MGP_PWKPhJ_P0059174 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.2924 | 99.0566 | mus_pahari | MGP_PahariEiJ_P0067557 | 99.2924 | 99.0566 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.7642 | 99.7642 | mus_musculus_akrj | MGP_AKRJ_P0059633 | 99.7642 | 99.7642 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_spretus | MGP_SPRETEiJ_P0058758 | 100 | 100 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.0566 | 98.5849 | rattus_norvegicus | ENSRNOP00000071227 | 83.8323 | 83.4331 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 99.5283 | 99.5283 | mus_spicilegus | ENSMSIP00000018819 | 84.2315 | 84.2315 |
MGP_CASTEiJ_G0026157 | mus_musculus_casteij | MGP_CASTEiJ_P0059603 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0058590 | 100 | 100 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |