Description

Ensembl ID MGP_CASTEiJ_G0025663 Gene ID Accession -
Symbol Polr1b Alias - Full Name polymerase (RNA) I polypeptide B
Status Confidence Length 27587 bases Strand Plus strand
Position 2 : 131484572 - 131512158 RNA binding domain RNA_pol_Rpb2_1 , RNA_pol_Rpa2_4 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0057486 RNA_pol_Rpb2_1 PF04563 3.5e-34 1
MGP_CASTEiJ_P0057486 RNA_pol_Rpa2_4 PF06883 4.1e-20 2
MGP_CASTEiJ_P0057486 RNA_pol_Rpb2_3 PF04565 3.5e-29 3
MGP_CASTEiJ_P0057486 RNA_pol_Rpb2_2 PF04561 8.1e-10 4
MGP_CASTEiJ_P0057485 RNA_pol_Rpb2_1 PF04563 8.3e-34 1
MGP_CASTEiJ_P0057485 RNA_pol_Rpa2_4 PF06883 6.8e-20 2
MGP_CASTEiJ_P0057485 RNA_pol_Rpb2_3 PF04565 1.3e-28 3
MGP_CASTEiJ_P0057485 RNA_pol_Rpb2_7 PF04560 1.1e-21 4
MGP_CASTEiJ_P0057485 RNA_pol_Rpb2_2 PF04561 1.4e-09 5
MGP_CASTEiJ_P0057485 RNA_pol_Rpb2_6 PF00562 1.5e-117 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Polr1b-001 MGP_CASTEiJ_T0057485 3998 1135aa MGP_CASTEiJ_P0057485"/note="transcript_id=MGP_CASTEiJ_T0057485
- MGP_CASTEiJ_T0057486 2758 754aa MGP_CASTEiJ_P0057486"/note="transcript_id=MGP_CASTEiJ_T0057486
- MGP_CASTEiJ_T0057487 663 No protein -
- MGP_CASTEiJ_T0057488 612 No protein -
- MGP_CASTEiJ_T0057489 720 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P002596647.396331.1562mus_musculus_casteijMGP_CASTEiJ_P005748547.312831.1013
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P007251044.633729.3867mus_musculus_casteijMGP_CASTEiJ_P005748546.167430.3965

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748599.735799.5595mus_musculus_129s1svimjMGP_129S1SvImJ_P005758096.669596.4987
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748594.449393.5683mus_caroliMGP_CAROLIEiJ_P005452699.443498.5158
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748510099.9119mus_musculus_ajMGP_AJ_P005761210099.9119
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748595.594795.3304mus_musculus_balbcjMGP_BALBcJ_P005755199.541399.2661
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748510099.8238mus_musculus_dba2jMGP_DBA2J_P005731110099.8238
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748595.594795.0661mus_musculus_c57bl6njMGP_C57BL6NJ_P005802499.086898.5388
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_fvbnjMGP_FVBNJ_P0057288100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_c3hhejMGP_C3HHeJ_P0057243100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_lpjMGP_LPJ_P0057446100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0057258100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_cbajMGP_CBAJ_P0057214100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748510099.9119mus_musculusENSMUSP0000009949410099.9119
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0058189100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748510099.9119mus_musculus_pwkphjMGP_PWKPhJ_P005707210099.9119
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748598.766596.5639mus_pahariMGP_PahariEiJ_P006550598.766596.5639
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P0057485100100mus_musculus_akrjMGP_AKRJ_P0057561100100
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748599.823899.5595mus_spretusMGP_SPRETEiJ_P005663599.823899.5595
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748598.678495.2423rattus_norvegicusENSRNOP0000002488298.678495.2423
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748599.735799.4714mus_spicilegusENSMSIP0000002108999.735799.4714
MGP_CASTEiJ_G0025663mus_musculus_casteijMGP_CASTEiJ_P005748599.911999.7357mus_musculus_wsbeijMGP_WSBEiJ_P005654399.911999.7357

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression