Description

Ensembl ID MGP_CASTEiJ_G0024327 Gene ID Accession -
Symbol Exosc1 Alias - Full Name exosome component 1
Status Confidence Length 9893 bases Strand Minus strand
Position 19 : 40355063 - 40364955 RNA binding domain ECR1_N , EXOSC1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_CASTEiJ_P0051590 ECR1_N PF14382 1.8e-09 1
MGP_CASTEiJ_P0051589 ECR1_N PF14382 2.3e-09 1
MGP_CASTEiJ_P0051589 EXOSC1 PF10447 1e-14 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Exosc1-201 MGP_CASTEiJ_T0051589 1630 195aa MGP_CASTEiJ_P0051589"/note="transcript_id=MGP_CASTEiJ_T0051589
- MGP_CASTEiJ_T0051590 1507 154aa MGP_CASTEiJ_P0051590"/note="transcript_id=MGP_CASTEiJ_T0051590

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0024327

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0051768100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P005158999.487299.4872mus_caroliMGP_CAROLIEiJ_P004878999.487299.4872
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_ajMGP_AJ_P0051777100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_balbcjMGP_BALBcJ_P0051722100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_dba2jMGP_DBA2J_P0051506100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_c57bl6njMGP_C57BL6NJ_P0052217100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_fvbnjMGP_FVBNJ_P0051460100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_c3hhejMGP_C3HHeJ_P0051454100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_lpjMGP_LPJ_P0051627100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0051459100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_cbajMGP_CBAJ_P0051400100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculusENSMUSP00000074756100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0052342100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_pwkphjMGP_PWKPhJ_P0051195100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P005158999.487298.9744mus_pahariMGP_PahariEiJ_P002175299.487298.9744
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_akrjMGP_AKRJ_P0051726100100
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P005158999.487299.4872mus_spretusMGP_SPRETEiJ_P005079499.487299.4872
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P005158999.487298.9744rattus_norvegicusENSRNOP0000006762799.487298.9744
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P005158999.487299.4872mus_spicilegusENSMSIP0000001844999.487299.4872
MGP_CASTEiJ_G0024327mus_musculus_casteijMGP_CASTEiJ_P0051589100100mus_musculus_wsbeijMGP_WSBEiJ_P0050738100100

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression