RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_CASTEiJ_G0023215	Gene ID		Accession	-
Symbol	Wdr43	Alias	-	Full Name	WD repeat domain 43
Status	Confidence	Length	46621 bases	Strand	Plus strand
Position	17 : 74206503 - 74253123	RNA binding domain	Utp12
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0048295	Utp12	PF04003	1.3e-21	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
Wdr43-201	MGP_CASTEiJ_T0048295	3457	677aa	MGP_CASTEiJ_P0048295"/note="transcript_id=MGP_CASTEiJ_T0048295

Gene Model

Click here to download MGP_CASTEiJ_G0023215's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0023215's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0024035	16.0458	8.02292	mus_musculus_casteij	MGP_CASTEiJ_P0048295	24.8154	12.4077
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0089583	11.0685	5.6302	mus_musculus_casteij	MGP_CASTEiJ_P0048295	25.5539	12.9985
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0094290	31.6049	16.5432	mus_musculus_casteij	MGP_CASTEiJ_P0048295	18.9069	9.8966
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0068237	31.8436	17.8771	mus_musculus_casteij	MGP_CASTEiJ_P0048295	16.839	9.45347
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0026192	20.303	9.54545	mus_musculus_casteij	MGP_CASTEiJ_P0048295	19.7932	9.30576
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0026304	25.4202	13.8655	mus_musculus_casteij	MGP_CASTEiJ_P0048295	17.873	9.74889
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0036449	28.534	14.3979	mus_musculus_casteij	MGP_CASTEiJ_P0048295	16.1004	8.12408
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0018944	16.1641	8.80579	mus_musculus_casteij	MGP_CASTEiJ_P0048295	19.7932	10.7829
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0030154	9.15675	4.19038	mus_musculus_casteij	MGP_CASTEiJ_P0048295	26.1448	11.9645
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0089005	17.9211	10.0358	mus_musculus_casteij	MGP_CASTEiJ_P0048295	7.38552	4.13589
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0022188	12.2783	6.41201	mus_musculus_casteij	MGP_CASTEiJ_P0048295	13.2939	6.94239
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0053371	37.4251	19.7605	mus_musculus_casteij	MGP_CASTEiJ_P0048295	18.4638	9.74889
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0044076	36.2805	20.7317	mus_musculus_casteij	MGP_CASTEiJ_P0048295	17.5775	10.0443
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0020209	30.6024	17.8313	mus_musculus_casteij	MGP_CASTEiJ_P0048295	18.7592	10.9306
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0054459	34.9835	21.7822	mus_musculus_casteij	MGP_CASTEiJ_P0048295	15.6573	9.74889
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0034948	16.3776	9.24856	mus_musculus_casteij	MGP_CASTEiJ_P0048295	12.5554	7.0901
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0038899	8.17801	3.99391	mus_musculus_casteij	MGP_CASTEiJ_P0048295	31.7578	15.5096
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0030078	26.8293	15.6098	mus_musculus_casteij	MGP_CASTEiJ_P0048295	16.2482	9.45347
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0083011	10.184	4.66491	mus_musculus_casteij	MGP_CASTEiJ_P0048295	22.8951	10.4874
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0075106	19.9095	10.4072	mus_musculus_casteij	MGP_CASTEiJ_P0048295	12.9985	6.79468
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0045417	16.4103	7.82051	mus_musculus_casteij	MGP_CASTEiJ_P0048295	18.9069	9.01034
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0056859	9.98004	4.25815	mus_musculus_casteij	MGP_CASTEiJ_P0048295	22.1566	9.45347
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0049675	12.1558	5.37273	mus_musculus_casteij	MGP_CASTEiJ_P0048295	26.7356	11.8168

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0048537	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	98.966	97.7843	mus_caroli	MGP_CAROLIEiJ_P0045597	98.966	97.7843
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_aj	MGP_AJ_P0048519	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_balbcj	MGP_BALBcJ_P0048479	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_dba2j	MGP_DBA2J_P0048252	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0048974	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_fvbnj	MGP_FVBNJ_P0048218	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_c3hhej	MGP_C3HHeJ_P0048225	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_lpj	MGP_LPJ_P0048362	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0048223	100	100
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_cbaj	MGP_CBAJ_P0048149	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus	ENSMUSP00000048337	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0049067	99.8523	99.8523
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	83.8996	80.9454	mus_musculus_pwkphj	MGP_PWKPhJ_P0047884	92.3577	89.1057
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	98.0798	95.421	mus_pahari	MGP_PahariEiJ_P0045103	98.3704	95.7037
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	100	100	mus_musculus_akrj	MGP_AKRJ_P0048477	100	100
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.7046	99.1137	mus_spretus	MGP_SPRETEiJ_P0047496	99.7046	99.1137
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	95.1256	91.4328	rattus_norvegicus	ENSRNOP00000033485	95.549	91.8398
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.7046	mus_spicilegus	ENSMSIP00000030805	99.8523	99.7046
MGP_CASTEiJ_G0023215	mus_musculus_casteij	MGP_CASTEiJ_P0048295	99.8523	99.8523	mus_musculus_wsbeij	MGP_WSBEiJ_P0047529	99.8523	99.8523

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression