RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_CASTEiJ_G0016925	Gene ID		Accession	-
Symbol	Polr3b	Alias	-	Full Name	polymerase (RNA) III (DNA directed) polypeptide B
Status	Confidence	Length	106868 bases	Strand	Plus strand
Position	10 : 84831437 - 84938304	RNA binding domain	RNA_pol_Rpb2_1 , RNA_pol_Rpb2_3 , RNA_pol_Rpb2_7 , RNA_pol_Rpb2_2 , RNA_pol_Rpb2_6 , RNA_pol_Rpb2_4 , RNA_pol_Rpb2_5
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_1	PF04563	9.3e-54	1
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_3	PF04565	5e-20	2
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_7	PF04560	1.6e-34	3
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_2	PF04561	3.4e-27	4
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_6	PF00562	4.2e-127	5
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_4	PF04566	2.5e-26	6
MGP_CASTEiJ_P0025966	RNA_pol_Rpb2_5	PF04567	5.4e-07	7

Showing 1 to 7 of 7 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
Polr3b-201	MGP_CASTEiJ_T0025966	4841	1133aa	MGP_CASTEiJ_P0025966"/note="transcript_id=MGP_CASTEiJ_T0025966

Showing 1 to 1 of 1 entries

Gene Model

Click here to download MGP_CASTEiJ_G0016925's gene model file

Protein-Protein Interaction (PPI)

Click here to download MGP_CASTEiJ_G0016925's PPI file

Paralogs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0072510	58.4327	37.6491	mus_musculus_casteij	MGP_CASTEiJ_P0025966	60.5472	39.0115
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0057485	47.3128	31.1013	mus_musculus_casteij	MGP_CASTEiJ_P0025966	47.3963	31.1562

Showing 1 to 2 of 2 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0026641	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	99.9117	99.9117	mus_caroli	MGP_CAROLIEiJ_P0024311	99.9117	99.9117
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_aj	MGP_AJ_P0026609	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_balbcj	MGP_BALBcJ_P0026586	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_dba2j	MGP_DBA2J_P0026440	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0027088	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_fvbnj	MGP_FVBNJ_P0026436	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_c3hhej	MGP_C3HHeJ_P0026387	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_lpj	MGP_LPJ_P0026552	100	100
MGP_CASTEiJ_G0016925	mus_musculus_casteij	MGP_CASTEiJ_P0025966	100	100	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0026434	100	100

Showing 1 to 10 of 20 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs