RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	MGP_C57BL6NJ_G0036099	Gene ID		Accession	-
Symbol	Rbm10	Alias	-	Full Name	RNA binding motif protein 10
Status	Confidence	Length	42012 bases	Strand	Plus strand
Position	X : 15908641 - 15950652	RNA binding domain	G-patch , OCRE , zf-RanBP , RRM_1
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C57BL6NJ_P0096281	G-patch	PF01585	2.2e-18	1
MGP_C57BL6NJ_P0096281	OCRE	PF17780	5e-18	2
MGP_C57BL6NJ_P0096281	zf-RanBP	PF00641	2.2e-06	3
MGP_C57BL6NJ_P0096281	RRM_1	PF00076	7.6e-13	4
MGP_C57BL6NJ_P0096282	G-patch	PF01585	2.2e-18	1
MGP_C57BL6NJ_P0096282	OCRE	PF17780	5e-18	2
MGP_C57BL6NJ_P0096282	zf-RanBP	PF00641	2.2e-06	3
MGP_C57BL6NJ_P0096282	RRM_1	PF00076	1e-12	4
MGP_C57BL6NJ_P0096283	G-patch	PF01585	2e-18	1
MGP_C57BL6NJ_P0096283	OCRE	PF17780	1.9e-17	2
MGP_C57BL6NJ_P0096283	zf-RanBP	PF00641	2e-06	3
MGP_C57BL6NJ_P0096283	RRM_1	PF00076	7.5e-10	4
MGP_C57BL6NJ_P0096285	G-patch	PF01585	2.2e-18	1
MGP_C57BL6NJ_P0096285	OCRE	PF17780	5e-18	2
MGP_C57BL6NJ_P0096285	zf-RanBP	PF00641	2.2e-06	3
MGP_C57BL6NJ_P0096285	RRM_1	PF00076	1e-12	4
MGP_C57BL6NJ_P0096286	G-patch	PF01585	2e-18	1
MGP_C57BL6NJ_P0096286	OCRE	PF17780	1.9e-17	2
MGP_C57BL6NJ_P0096286	zf-RanBP	PF00641	2e-06	3
MGP_C57BL6NJ_P0096286	RRM_1	PF00076	7.5e-10	4
MGP_C57BL6NJ_P0096287	G-patch	PF01585	2.2e-18	1
MGP_C57BL6NJ_P0096287	OCRE	PF17780	5e-18	2
MGP_C57BL6NJ_P0096287	zf-RanBP	PF00641	2.2e-06	3
MGP_C57BL6NJ_P0096287	RRM_1	PF00076	7.6e-13	4

Showing 1 to 24 of 24 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

Show entries

Search:

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_C57BL6NJ_T0096282	3564	930aa	MGP_C57BL6NJ_P0096282"/note="transcript_id=MGP_C57BL6NJ_T0096282
-	MGP_C57BL6NJ_T0096283	3172	853aa	MGP_C57BL6NJ_P0096283"/note="transcript_id=MGP_C57BL6NJ_T0096283
-	MGP_C57BL6NJ_T0096284	2160	No protein	-
-	MGP_C57BL6NJ_T0096285	2793	930aa	MGP_C57BL6NJ_P0096285"/note="transcript_id=MGP_C57BL6NJ_T0096285
-	MGP_C57BL6NJ_T0096286	2562	853aa	MGP_C57BL6NJ_P0096286"/note="transcript_id=MGP_C57BL6NJ_T0096286
-	MGP_C57BL6NJ_T0096287	2790	929aa	MGP_C57BL6NJ_P0096287"/note="transcript_id=MGP_C57BL6NJ_T0096287
Rbm10-001	MGP_C57BL6NJ_T0096281	3698	929aa	MGP_C57BL6NJ_P0096281"/note="transcript_id=MGP_C57BL6NJ_T0096281

Showing 1 to 7 of 7 entries

Previous1Next

Gene Model

Click here to download MGP_C57BL6NJ_G0036099's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download MGP_C57BL6NJ_G0036099's PPI file

Paralogs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0094885	73.3742	57.6687	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	64.3011	50.5376
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0094913	46.7742	24.7312	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	9.35484	4.94624

Showing 1 to 2 of 2 entries

Previous1Next

Orthologs

Show entries

Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	99.4624	99.2473	mus_caroli	MGP_CAROLIEiJ_P0091100	99.5694	99.3541
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	93.9785	93.9785	mus_musculus_aj	MGP_AJ_P0095836	100	100
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	99.8925	99.7849	mus_musculus_balbcj	MGP_BALBcJ_P0095755	96.7708	96.6667
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	100	100	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0095751	100	100
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	99.8925	99.7849	mus_musculus_lpj	MGP_LPJ_P0095470	99.8925	99.7849
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	97.6344	97.5269	mus_musculus_c3hhej	MGP_C3HHeJ_P0095334	87.1401	87.0441
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	100	100	mus_musculus	ENSMUSP00000111032	100	100
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	100	100	mus_musculus_cbaj	MGP_CBAJ_P0095248	100	100
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	99.2473	98.8172	mus_pahari	MGP_PahariEiJ_P0088741	99.3541	98.9236
MGP_C57BL6NJ_G0036099	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0096282	100	100	mus_spretus	MGP_SPRETEiJ_P0094851	87.9017	87.9017

Showing 1 to 10 of 20 entries

Previous1 2Next

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression