Description

Ensembl ID MGP_C57BL6NJ_G0035762 Gene ID Accession -
Symbol Rbm5 Alias - Full Name RNA binding motif protein 5
Status Confidence Length 30616 bases Strand Minus strand
Position 9 : 112620421 - 112651036 RNA binding domain G-patch , OCRE , zf-RanBP , RRM_1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0094889 G-patch PF01585 9e-19 1
MGP_C57BL6NJ_P0094889 OCRE PF17780 1.4e-18 2
MGP_C57BL6NJ_P0094889 zf-RanBP PF00641 1.7e-09 3
MGP_C57BL6NJ_P0094889 RRM_1 PF00076 3.4e-14 4
MGP_C57BL6NJ_P0094885 G-patch PF01585 9e-19 1
MGP_C57BL6NJ_P0094885 OCRE PF17780 1.4e-18 2
MGP_C57BL6NJ_P0094885 zf-RanBP PF00641 1.7e-09 3
MGP_C57BL6NJ_P0094885 RRM_1 PF00076 3.4e-14 4
MGP_C57BL6NJ_P0094890 G-patch PF01585 1.4e-16 1
MGP_C57BL6NJ_P0094902 zf-RanBP PF00641 4.6e-10 1
MGP_C57BL6NJ_P0094902 RRM_1 PF00076 3.8e-08 2
MGP_C57BL6NJ_P0094899 RRM_1 PF00076 2.2e-08 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Rbm5-001 MGP_C57BL6NJ_T0094885 3205 815aa MGP_C57BL6NJ_P0094885"/note="transcript_id=MGP_C57BL6NJ_T0094885
- MGP_C57BL6NJ_T0094886 6321 No protein -
- MGP_C57BL6NJ_T0094887 2691 No protein -
- MGP_C57BL6NJ_T0094888 2986 150aa MGP_C57BL6NJ_P0094888"/note="transcript_id=MGP_C57BL6NJ_T0094888
- MGP_C57BL6NJ_T0094889 3064 814aa MGP_C57BL6NJ_P0094889"/note="transcript_id=MGP_C57BL6NJ_T0094889
- MGP_C57BL6NJ_T0094890 835 153aa MGP_C57BL6NJ_P0094890"/note="transcript_id=MGP_C57BL6NJ_T0094890
- MGP_C57BL6NJ_T0094891 631 No protein -
- MGP_C57BL6NJ_T0094892 793 No protein -
- MGP_C57BL6NJ_T0094893 4703 No protein -
- MGP_C57BL6NJ_T0094894 1704 115aa MGP_C57BL6NJ_P0094894"/note="transcript_id=MGP_C57BL6NJ_T0094894
- MGP_C57BL6NJ_T0094895 322 100aa MGP_C57BL6NJ_P0094895"/note="transcript_id=MGP_C57BL6NJ_T0094895
- MGP_C57BL6NJ_T0094896 500 No protein -
- MGP_C57BL6NJ_T0094897 539 No protein -
- MGP_C57BL6NJ_T0094898 600 No protein -
- MGP_C57BL6NJ_T0094899 896 174aa MGP_C57BL6NJ_P0094899"/note="transcript_id=MGP_C57BL6NJ_T0094899
- MGP_C57BL6NJ_T0094900 784 150aa MGP_C57BL6NJ_P0094900"/note="transcript_id=MGP_C57BL6NJ_T0094900
- MGP_C57BL6NJ_T0094901 502 No protein -
- MGP_C57BL6NJ_T0094902 850 251aa MGP_C57BL6NJ_P0094902"/note="transcript_id=MGP_C57BL6NJ_T0094902
- MGP_C57BL6NJ_T0094903 1939 No protein -
- MGP_C57BL6NJ_T0094904 869 137aa MGP_C57BL6NJ_P0094904"/note="transcript_id=MGP_C57BL6NJ_T0094904
- MGP_C57BL6NJ_T0094905 781 115aa MGP_C57BL6NJ_P0094905"/note="transcript_id=MGP_C57BL6NJ_T0094905
- MGP_C57BL6NJ_T0094906 897 No protein -
- MGP_C57BL6NJ_T0094907 1272 No protein -
- MGP_C57BL6NJ_T0094908 1775 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009628264.301150.5376mus_musculus_c57bl6njMGP_C57BL6NJ_P009488573.374257.6687
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009491333.333319.8925mus_musculus_c57bl6njMGP_C57BL6NJ_P00948857.607364.53988

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488510099.8773mus_caroliMGP_CAROLIEiJ_P008976210099.8773
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_ajMGP_AJ_P0094444100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_balbcjMGP_BALBcJ_P0094370100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0094354100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_lpjMGP_LPJ_P0094084100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_c3hhejMGP_C3HHeJ_P0093949100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculusENSMUSP00000138379100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_cbajMGP_CBAJ_P0093865100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488599.877399.7546mus_pahariMGP_PahariEiJ_P002544299.877399.7546
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488599.877399.8773mus_spretusMGP_SPRETEiJ_P009348299.877399.8773
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_fvbnjMGP_FVBNJ_P0093927100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488599.754699.6319mus_spicilegusENSMSIP0000002784899.754699.6319
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_dba2jMGP_DBA2J_P0094074100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_wsbeijMGP_WSBEiJ_P0092945100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_casteijMGP_CASTEiJ_P0094547100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_nzohlltjMGP_NZOHlLtJ_P0095212100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_pwkphjMGP_PWKPhJ_P0093985100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P0094885100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0093904100100
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488510099.8773mus_musculus_akrjMGP_AKRJ_P009439710099.8773
MGP_C57BL6NJ_G0035762mus_musculus_c57bl6njMGP_C57BL6NJ_P009488599.263898.8957rattus_norvegicusENSRNOP0000002452999.50899.139

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression