RBP Type |
N.A. |
Diseases |
|
Drug |
|
Main interacting RNAs |
|
Moonlighting functions |
|
Localizations |
|
BulkPerturb-seq
|
|
Ensembl ID | MGP_C57BL6NJ_G0035634 | Gene ID |
|
Accession |
- |
Symbol |
Xrn1 |
Alias |
- |
Full Name |
5'-3' exoribonuclease 1 |
Status |
Confidence |
Length |
108403 bases |
Strand |
Plus strand |
Position |
9 : 99897536 - 100005938 |
RNA binding domain |
SH3_12 , XRN_N , XRN1_D1 |
Summary |
N.A. |
RNA binding domains (RBDs)
Protein |
Domain |
Pfam ID |
E-value |
Domain number |
MGP_C57BL6NJ_P0094205 |
SH3_12 |
PF18129 |
3.7e-19 |
1 |
MGP_C57BL6NJ_P0094205 |
XRN_N |
PF03159 |
1.7e-93 |
2 |
MGP_C57BL6NJ_P0094205 |
XRN1_D1 |
PF18332 |
7.6e-33 |
3 |
MGP_C57BL6NJ_P0094204 |
SH3_12 |
PF18129 |
3.8e-19 |
1 |
MGP_C57BL6NJ_P0094204 |
XRN_N |
PF03159 |
1.7e-93 |
2 |
MGP_C57BL6NJ_P0094204 |
XRN1_D1 |
PF18332 |
7.4e-33 |
3 |
MGP_C57BL6NJ_P0094209 |
XRN_N |
PF03159 |
3.5e-94 |
1 |
MGP_C57BL6NJ_P0094209 |
XRN1_D1 |
PF18332 |
9.8e-07 |
2 |
MGP_C57BL6NJ_P0094206 |
XRN_N |
PF03159 |
8.4e-13 |
1 |
RNA binding proteomes (RBPomes)
Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
Pubmed ID |
Title |
Author |
Time |
Journal |
Name |
Transcript ID |
bp |
Protein |
Translation ID |
Xrn1-001 |
MGP_C57BL6NJ_T0094204 |
5499 |
1723aa |
MGP_C57BL6NJ_P0094204"/note="transcript_id=MGP_C57BL6NJ_T0094204 |
- |
MGP_C57BL6NJ_T0094205 |
10204 |
1719aa |
MGP_C57BL6NJ_P0094205"/note="transcript_id=MGP_C57BL6NJ_T0094205 |
- |
MGP_C57BL6NJ_T0094206 |
357 |
40aa |
MGP_C57BL6NJ_P0094206"/note="transcript_id=MGP_C57BL6NJ_T0094206 |
- |
MGP_C57BL6NJ_T0094207 |
3357 |
No protein |
- |
- |
MGP_C57BL6NJ_T0094208 |
6235 |
No protein |
- |
- |
MGP_C57BL6NJ_T0094209 |
3093 |
969aa |
MGP_C57BL6NJ_P0094209"/note="transcript_id=MGP_C57BL6NJ_T0094209 |
- |
MGP_C57BL6NJ_T0094210 |
3615 |
No protein |
- |
- |
MGP_C57BL6NJ_T0094211 |
844 |
No protein |
- |
- |
MGP_C57BL6NJ_T0094212 |
3046 |
No protein |
- |
Pathway ID |
Pathway Name |
Source |
| | |
ensgID |
Trait |
pValue |
Pubmed ID |
ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0058565 | 49.632 | 34.7003 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 27.3941 | 19.1526 |
Ensembl ID |
Source |
Target |
Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 94.2542 | 93.4997 | mus_caroli | MGP_CAROLIEiJ_P0089113 | 98.7234 | 97.9331 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_aj | MGP_AJ_P0093764 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.3035 | 99.3035 | mus_musculus_balbcj | MGP_BALBcJ_P0093692 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_129s1svimj | MGP_129S1SvImJ_P0093677 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_lpj | MGP_LPJ_P0093407 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_c3hhej | MGP_C3HHeJ_P0093268 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus | ENSMUSP00000034981 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_cbaj | MGP_CBAJ_P0093187 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 98.6651 | 96.8659 | mus_pahari | MGP_PahariEiJ_P0024777 | 98.9523 | 97.1479 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.4777 | 99.3616 | mus_spretus | MGP_SPRETEiJ_P0092809 | 99.4777 | 99.3616 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_fvbnj | MGP_FVBNJ_P0093256 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.4777 | 99.1875 | mus_spicilegus | ENSMSIP00000018995 | 99.7091 | 99.4183 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_dba2j | MGP_DBA2J_P0093395 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_wsbeij | MGP_WSBEiJ_P0092265 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.942 | 99.7678 | mus_musculus_casteij | MGP_CASTEiJ_P0093862 | 99.942 | 99.7678 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.7678 | 99.5937 | mus_musculus_nzohlltj | MGP_NZOHlLtJ_P0094533 | 99.7678 | 99.5937 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 99.7678 | 99.5937 | mus_musculus_pwkphj | MGP_PWKPhJ_P0093301 | 99.7678 | 99.5937 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_nodshiltj | MGP_NODShiLtJ_P0093231 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 100 | 100 | mus_musculus_akrj | MGP_AKRJ_P0093717 | 100 | 100 |
MGP_C57BL6NJ_G0035634 | mus_musculus_c57bl6nj | MGP_C57BL6NJ_P0094204 | 97.3883 | 94.2542 | rattus_norvegicus | ENSRNOP00000014481 | 97.3883 | 94.2542 |
Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |