Description

Ensembl ID MGP_C57BL6NJ_G0035634 Gene ID Accession -
Symbol Xrn1 Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 108403 bases Strand Plus strand
Position 9 : 99897536 - 100005938 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
MGP_C57BL6NJ_P0094205 SH3_12 PF18129 3.7e-19 1
MGP_C57BL6NJ_P0094205 XRN_N PF03159 1.7e-93 2
MGP_C57BL6NJ_P0094205 XRN1_D1 PF18332 7.6e-33 3
MGP_C57BL6NJ_P0094204 SH3_12 PF18129 3.8e-19 1
MGP_C57BL6NJ_P0094204 XRN_N PF03159 1.7e-93 2
MGP_C57BL6NJ_P0094204 XRN1_D1 PF18332 7.4e-33 3
MGP_C57BL6NJ_P0094209 XRN_N PF03159 3.5e-94 1
MGP_C57BL6NJ_P0094209 XRN1_D1 PF18332 9.8e-07 2
MGP_C57BL6NJ_P0094206 XRN_N PF03159 8.4e-13 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
Xrn1-001 MGP_C57BL6NJ_T0094204 5499 1723aa MGP_C57BL6NJ_P0094204"/note="transcript_id=MGP_C57BL6NJ_T0094204
- MGP_C57BL6NJ_T0094205 10204 1719aa MGP_C57BL6NJ_P0094205"/note="transcript_id=MGP_C57BL6NJ_T0094205
- MGP_C57BL6NJ_T0094206 357 40aa MGP_C57BL6NJ_P0094206"/note="transcript_id=MGP_C57BL6NJ_T0094206
- MGP_C57BL6NJ_T0094207 3357 No protein -
- MGP_C57BL6NJ_T0094208 6235 No protein -
- MGP_C57BL6NJ_T0094209 3093 969aa MGP_C57BL6NJ_P0094209"/note="transcript_id=MGP_C57BL6NJ_T0094209
- MGP_C57BL6NJ_T0094210 3615 No protein -
- MGP_C57BL6NJ_T0094211 844 No protein -
- MGP_C57BL6NJ_T0094212 3046 No protein -

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P005856549.63234.7003mus_musculus_c57bl6njMGP_C57BL6NJ_P009420427.394119.1526

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420494.254293.4997mus_caroliMGP_CAROLIEiJ_P008911398.723497.9331
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_ajMGP_AJ_P0093764100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.303599.3035mus_musculus_balbcjMGP_BALBcJ_P0093692100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_129s1svimjMGP_129S1SvImJ_P0093677100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_lpjMGP_LPJ_P0093407100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_c3hhejMGP_C3HHeJ_P0093268100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculusENSMUSP00000034981100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_cbajMGP_CBAJ_P0093187100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420498.665196.8659mus_pahariMGP_PahariEiJ_P002477798.952397.1479
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.477799.3616mus_spretusMGP_SPRETEiJ_P009280999.477799.3616
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_fvbnjMGP_FVBNJ_P0093256100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.477799.1875mus_spicilegusENSMSIP0000001899599.709199.4183
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_dba2jMGP_DBA2J_P0093395100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_wsbeijMGP_WSBEiJ_P0092265100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.94299.7678mus_musculus_casteijMGP_CASTEiJ_P009386299.94299.7678
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.767899.5937mus_musculus_nzohlltjMGP_NZOHlLtJ_P009453399.767899.5937
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420499.767899.5937mus_musculus_pwkphjMGP_PWKPhJ_P009330199.767899.5937
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_nodshiltjMGP_NODShiLtJ_P0093231100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P0094204100100mus_musculus_akrjMGP_AKRJ_P0093717100100
MGP_C57BL6NJ_G0035634mus_musculus_c57bl6njMGP_C57BL6NJ_P009420497.388394.2542rattus_norvegicusENSRNOP0000001448197.388394.2542

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression