RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	MGP_C57BL6NJ_G0034009	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2710 bases	Strand	Minus strand
Position	8 : 31277509 - 31280218	RNA binding domain	UPF0020 , Met_10 , Methyltransf_15
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
MGP_C57BL6NJ_P0089099	UPF0020	PF01170	2e-05	1
MGP_C57BL6NJ_P0089099	Met_10	PF02475	1.4e-06	2
MGP_C57BL6NJ_P0089099	Methyltransf_15	PF09445	9e-42	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	MGP_C57BL6NJ_T0089099	2574	858aa	MGP_C57BL6NJ_P0089099"/note="transcript_id=MGP_C57BL6NJ_T0089099

Gene Model

Click here to download MGP_C57BL6NJ_G0034009's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download MGP_C57BL6NJ_G0034009's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0065000	95.1934	92.1454	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	94.6387	91.6084

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_aj	MGP_AJ_P0088638	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_balbcj	MGP_BALBcJ_P0088583	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	99.6504	99.0676	mus_musculus_129s1svimj	MGP_129S1SvImJ_P0088550	99.7666	99.1832
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	99.6504	99.0676	mus_musculus_lpj	MGP_LPJ_P0088321	99.7666	99.1832
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_c3hhej	MGP_C3HHeJ_P0088148	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_cbaj	MGP_CBAJ_P0088097	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	87.4126	82.1678	mus_pahari	MGP_PahariEiJ_P0056964	91.5751	86.0806
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	93.007	87.9953	mus_pahari	MGP_PahariEiJ_P0056963	93.4426	88.4075
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_fvbnj	MGP_FVBNJ_P0088133	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	97.669	95.5711	mus_spicilegus	ENSMSIP00000036171	96.8786	94.7977
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_dba2j	MGP_DBA2J_P0088292	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	80.5361	80.4196	mus_musculus_casteij	MGP_CASTEiJ_P0088681	98.7143	98.5714
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	100	100	mus_musculus_nzohlltj	MGP_NZOHlLtJ_P0089389	100	100
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	64.3357	63.986	mus_musculus_pwkphj	MGP_PWKPhJ_P0088098	82.0208	81.575
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	98.2517	96.9697	mus_musculus_nodshiltj	MGP_NODShiLtJ_P0088168	98.5965	97.3099
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	94.0559	92.8904	mus_musculus_akrj	MGP_AKRJ_P0088564	98.1752	96.9586
MGP_C57BL6NJ_G0034009	mus_musculus_c57bl6nj	MGP_C57BL6NJ_P0089099	89.627	83.4499	rattus_norvegicus	ENSRNOP00000010783	90.4706	84.2353

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression